Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=301019445 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||||||| || |||||||| ||| ||| || || |||||||| || ||| Sbjct 196654323 CAAGCAAAGTCACAATGGAGACCCTCATCCCTAGAAATGAGCTCATTTGAAAAAGTCAAT 196654382 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 ||||||||||| |||| ||||| | |||||| || ||| |||| Sbjct 196654383 CCTGGCATCAAACCTCTCTTTTTCAGCCAAAAGATAGCA-CAAA 196654425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718243531800