Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq2 84.2 2e-11 >seq1 Length=301019445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| |||||||| || |||||||| ||| ||| || || |||||||| || ||| Sbjct 196654323 CAAGCAAAGTCACAATGGAGACCCTCATCCCTAGAAATGAGCTCATTTGAAAAAGTCAAT 196654382 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||||||||| |||| ||||| | |||||| || ||| Sbjct 196654383 CCTGGCATCAAACCTCTCTTTTTCAGCCAAAAGATAGCA 196654421 >seq2 Length=163962470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || ||||||||||| || | || || || || ||| | || ||||| || ||| Sbjct 163233285 AAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTT 163233226 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || |||| ||||| ||||||||||| | | ||| ||| || ||| Sbjct 163233225 AATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAG 163233166 Query 13777 AATATTCCCTCAACTGCAGCAAACGC 13802 || || || ||||| |||||| || Sbjct 163233165 AAAATCCCTTCAACACAAGCAAAAGC 163233140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478579066700280