Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 4e-13 seq8 84.2 2e-11 seq12 82.4 6e-11 >seq10 Length=205736368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||| || | || |||||| || | ||||||||||| Sbjct 339579 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCT 339638 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | || || |||||||| ||||||| || || || | || Sbjct 339639 AGGGTACGGCCGTCATCAAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGG 339698 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | || || || ||| |||||| ||| || || Sbjct 339699 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCG-GAGCTTTCCAC 339757 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| || ||||||||||| || ||||| Sbjct 339758 CTCGAGGGTGATGGTCTTTCCGGTAAGGGTTTTCACAAAGATCTGCAT 339805 >seq8 Length=153299543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||| || | ||| ||||| || | |||||||||| Sbjct 133642793 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCT 133642852 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| || | || || |||||||| ||||||| || ||||| | || Sbjct 133642853 AAAGTACGGCCGTCATCAAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGTGGA 133642912 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 | ||||| || || |||| | || || | ||| ||||| ||| | | || Sbjct 133642913 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTATCAATGGTGTCTG-AGCTTTCCAC 133642971 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| || ||||||||||| || ||||| Sbjct 133642972 CTCGAGGGTGATGGTCTTTCCGGTCAGGGTTTTCACAAAGATCTGCAT 133643019 >seq12 Length=229934170 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||||||||| ||| |||||| || | || || || | | || | | || Sbjct 186924360 AACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAGTTCTGCCATCC 186924419 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || ||||||||||| ||||| ||||| | || | || ||||| || Sbjct 186924420 TCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGGAATCCCCTCTTTGTCT 186924479 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| ||||||| || ||| || || | ||| || || | || || || Sbjct 186924480 TGGATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCAAGGTAATCGTC 186924539 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || | ||| || ||||||||||||||| Sbjct 186924540 TTCCCAGTCAAAGTCTTAACAAAAATTTGCATT 186924572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381362037798366