Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq12 100 3e-16 seq10 91.5 1e-13 seq7 84.2 2e-11 seq3 84.2 2e-11 >seq12 Length=229934170 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || ||||| |||||||| || | ||| || ||||| || ||| Sbjct 186925053 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCAAGTGTTCTACCATCTTCAAGCTGT 186925112 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| ||||||| | |||||||| || | ||||| || ||||| |||||| Sbjct 186925113 TTTCCAGCAAAGATCAGCCTCTGCTGATCAGGTGAAATGCCCTCCTTGTCTTGAATTTTA 186925172 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||| | | || || |||| ||| | ||||| |||||| Sbjct 186925173 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 186925232 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| |||||||||||||| Sbjct 186925233 AGAGTTTTAACGAATATTTGCAT 186925255 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 142959 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTC 143017 |||| | |||||||| || | ||||| ||| || || | ||||||||||| || ||| Sbjct 117694476 CTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTCCTGTATGTTGTAGTCAGCTG 117694417 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| ||| ||||| ||||| || || ||| | |||| ||| | ||| ||||| || Sbjct 117694416 AGTGTCCTCCCATCTTCAAGTTGCTTGCCTGCAAATATCAAACGCTACTGGTCGGG-GGA 117694358 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 117694357 ATACCTTCCTTGTC 117694344 >seq10 Length=205736368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||||| | || ||||| | ||| || ||||| || ||||||||||| Sbjct 187644235 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 187644294 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| || || || || || |||||| | |||| ||| ||||| || || || Sbjct 187644295 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGTGGA 187644354 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || ||| ||| | | || | ||||| | || || Sbjct 187644355 ATCCCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCGATGGTGTCTGAACTCTCAACC 187644414 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || |||||||| || ||||| || |||||| Sbjct 187644415 TCCAAGGTGATGGTCTTTCCAGTCAATGTCTTAACGAAAATCTGCATA 187644462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/119 (77%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCT 143032 ||| | ||||| || |||||||| || ||||||||||| || || |||| ||| Sbjct 3762238 AACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAAGGT--TCGACCATCT 3762181 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || |||||||| |||||| | ||||| | |||||||| || |||||||||||||| || Sbjct 3762180 TCCAGTTGTTTCCCAGCAAATATCAGTCTCTGCTGATCAGGCGGTATGCCTTCTTTATC 3762122 >seq7 Length=222112641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| || |||| ||| |||||||| || || |||||||| | Sbjct 220953979 CCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 220954038 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| | ||||| |||||| | || || | ||||| || |||| Sbjct 220954039 AGAGT--TCGACCATCTTCCAACTGTTTGCCAGCAAAAATTAGCCTCTGCTGGTCAGGAG 220954096 Query 143076 GTATGCCTTCTTTGTC--GGTAA 143096 |||| ||||||||||| ||||| Sbjct 220954097 GTATCCCTTCTTTGTCCTGGTAA 220954119 >seq3 Length=261510930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 ||||||| | | |||||| || |||| | ||||||||||| || |||||||| ||| Sbjct 37116929 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCATTGATTCTTTTTGAATATTGTAATCAGCT 37116988 Query 143017 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | | |||| ||||| | |||||| ||| || | || || | ||||||||| || Sbjct 37116989 A---GAGTTCGACCATCTTCCAATTGTTTGCCACCAAAAATTAGTCTCTGCTGATCGAGA 37117045 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTT 143100 ||||| ||||||||||| |||||| Sbjct 37117046 GGTATCCCTTCTTTGTCTTGAATTTT 37117071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507004088594640