Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 seq10 98.7 8e-16 seq8 98.7 8e-16 seq12 93.3 4e-14 >seq3 Length=261510930 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| | ||| || |||| ||| | || || || ||||||||||||||||| | Sbjct 37145357 TTCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGAATATTGTAATCAG 37145416 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG- 18931 | | ||| | | || |||| |||||| || || |||| ||||| | ||| | |||| Sbjct 37145417 CTAGAGTTCGGCCATCTTCCAACTGTTTGCCACCAAAAATTAGTCTTTACTGGT-CACGC 37145475 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | || |||||||| |||||| || || | | ||| || |||| | || Sbjct 37145476 GGTATTCCGTCTTTGTCCTGAATTTTGGCCTTGACATTGTCGATTGTGTCGCTACTTTCG 37145535 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||||||| || || |||| ||| ||||| || || ||||| Sbjct 37145536 ACTTCAAGGGTAATGGTCTTCCCGGTTAGAGTCTTGACGAAGATCTGCAT 37145585 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| | ||| || |||| ||| | | | || || ||||||||||||||||| | Sbjct 37116927 TTCCTCCTCTGAGCCTCAAAACCAAGTGAAGCATTGATTCTTTTTGAATATTGTAATCAG 37116986 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | || |||| ||||| || || |||| |||||||||||||| | | Sbjct 37116987 CTAGAGTTCGACCATCTTCCAATTGTTTGCCACCAAAAATTAGTCTCTGCTGATCGAGAG 37117046 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCA-GGCTCC 18991 | | || |||||||| |||||| || || | | ||| | |||| | | Sbjct 37117047 GTATCCCTTCTTTGTCTTGAATTTTGGCCTTGACATTGTCGATCATGTCGCTACTTTTGA 37117106 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | | ||| |||||||| | |||| |||||||| || || | ||| Sbjct 37117107 CTTCCAAGGGTGATGGTTTTCCTGGTTAGTGTTTTGACGAAGATCTACAT 37117156 >seq10 Length=205736368 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| |||||||||||||| || ||||| ||||||| || | | || || ||||| Sbjct 338690 GTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCGAGCTG 338749 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || || |||||||| || ||| | |||||| ||||| ||| || Sbjct 338750 CTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTT 338809 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | |||||| | |||| || | || ||||| || || || Sbjct 338810 AGTCTTCACATTGTCAATAGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCAGT 338869 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||||||||| Sbjct 338870 CAAGGTCTTCACAAAAATTTGCAT 338893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | | ||| ||||| | || | || || |||||||||||||||||||| ||| Sbjct 338895 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTTTGAATATTGTAATCGGCC 338954 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| ||| ||||| ||| |||| | || ||||| ||| || Sbjct 338955 AGTGTCCTTCCATCTTCCAACTGCTTACCGGCAAAAATCAACCTTTGCTGGTCCGGTGGG 339014 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | ||||||||||| ||| || || || | | ||| || | ||| || ||| Sbjct 339015 ATACCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGT---GTCAGAGCTTTCC 339071 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| || || || ||||| || || || |||||||| Sbjct 339072 ACCTCAAGGGTAATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 339121 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | | ||||| ||| | ||| |||||||| || ||||||||||| || Sbjct 149571141 CCTCCCCTCAATCGCAGCACCAAGTGTAGCGTGGACTCCTTCTGGATATTGTAATCAGCA 149571200 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| ||||| ||| | || | || ||||||||| || Sbjct 149571201 AGGGTCCTCCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 149571260 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || || ||| || || | | | ||||| | ||| | Sbjct 149571261 ATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTATCAATTGTATCAGAACTCTCGACT 149571320 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || || || || |||||||| || ||||| Sbjct 149571321 TCCAAGGTGATGGTTTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 149571367 >seq8 Length=153299543 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| |||||||||||||| || ||||| ||||||| || | | || || ||||| Sbjct 133641676 GTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCGAGCTG 133641735 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || || |||||||| || ||| | |||||| ||||| ||| || Sbjct 133641736 CTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTT 133641795 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | ||| |||||| | |||| || | || ||||| || || || Sbjct 133641796 AGTCTTCACATTGTCGATAGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCAGT 133641855 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 133641856 CAAGGTCTTCACAAAAATCTGCAT 133641879 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | | ||| ||||| | || | || || ||||| |||||||||||||| ||| Sbjct 133641881 CCTCCCCTTAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCC 133641940 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || |||| ||| ||||| ||| |||| | || |||||||| || Sbjct 133641941 AGTGTCCGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGATCTGGTGGG 133642000 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||||||| ||| || || || | | ||| || ||| ||| Sbjct 133642001 ATGCCCTCTTTGTCCTGAATCTTGGCCTTAACGTTGTCGATTGTGTCGGAGCTTTCCACC 133642060 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| || || || |||||||| || || | |||||| Sbjct 133642061 TCAAGGGTAATGGTCTTGCCAGTCAAAGTTTTCACGAAGACTTGCAT 133642107 >seq12 Length=229934170 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || || || | ||| | ||||||| || | || |||||||| || || || || || Sbjct 186924342 TTCCCCCCCCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCT 186924401 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 || | ||| || | ||||| || |||||||| ||| |||| | | ||||||||| | Sbjct 186924402 GCAAGAGTTCTGCCATCCTCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGG 186924461 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | ||||||||||| || || ||| || | | | | ||||| | ||| Sbjct 186924462 GGAATCCCCTCTTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCA 186924521 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | |||||| || || || || ||||| || ||||||||||||||| Sbjct 186924522 ACCTCCAAGGTAATCGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCATT 186924572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414564579410038