Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 5e-11 >seq3 Length=261510930 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/238 (68%), Gaps = 14/238 (6%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || ||| ||||| || | ||| || |||||||| ||||||||||||| Sbjct 37145359 CCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGAATATTGTAATCAG-- 37145416 Query 33203 AAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | ||||| | || ||||| || || |||| ||| |||| | || |||||| Sbjct 37145417 --CTAGAGTTCGGCCATCTTCCAACTGTTTGCCACCAAAAATTAGTCTTTACTGGTCACG 37145474 Query 33259 GGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 ||||| || ||||| || || | ||| || || | | || |||||| | Sbjct 37145475 CGGTATTCCGTCTTTGTCCTGAATTTTGGCC---TTGACATTGTCGATTGTGTCGCTACT 37145531 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || || || || || || || || || ||||| || ||||| || |||||| || Sbjct 37145532 TTCGACTTCAAGGGTAATGGTCTTCCCGGTTAGAGTCTTGACGAAGATCTGCATGATT 37145589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318771278939046