Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 3e-14 seq9 93.3 3e-14 seq12 89.7 4e-13 >seq10 Length=205736368 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||||| | |||||||||||||||| ||| || || ||||| ||||| Sbjct 149589394 ACCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGC 149589453 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | |||| || | ||| || || ||||| ||||| || ||||| || | || Sbjct 149589454 AAGGGTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGG 149589513 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| || || || || || ||| ||||| | ||| || Sbjct 149589514 AATCCCCTCTTTATCTTGGATCTTCGCCTTCACATTATCAATTGTATCAGAACTCTCGAC 149589573 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || || ||||| ||||| || |||||| Sbjct 149589574 CTCCAAGGTGATGGTTTTCCCTGTCAATGTCTTGACAAAGATCTGCATG 149589622 >seq9 Length=238794889 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||||| | |||||||||||||||| ||| || || ||||| ||||| Sbjct 232658398 ACCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGC 232658339 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | |||| || | ||| || || ||||| ||||| || ||||| || | || Sbjct 232658338 AAGGCTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGG 232658279 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||||||| || || || || || ||| ||||| | ||| || Sbjct 232658278 AATCCCCTCTTTATCTTGGATCTTCGCCTTCACATTATCAATTGTATCAGAACTCTCGAC 232658219 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || || ||||| ||||| || |||||| Sbjct 232658218 CTCCAAGGTGATGGTTTTCCCTGTCAATGTCTTGACAAAGATCTGCATG 232658170 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| || || |||||||| | ||| |||| |||| || || || ||||| Sbjct 232793922 TCTTTCTGGATGTTATAATCAGCAAGCGTACGACCATCCTCCAGCTGCTTGCCAGCAAAG 232793863 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || |||| |||||||| | || | |||||||||||| ||| ||| ||| || || Sbjct 232793862 ATTAACCTCTGCTGGTCTGGTGGAATACCTTCTTTATCCTGAATCTTTGCTTTCACGTTA 232793803 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | |||||| || | || ||||| || ||||||| ||||| || Sbjct 232793802 TCAATGGTATCCGAGCTCTCCACCTCCAAAGTGATTGTCTTCCCGGTTAGTGTCTTGACG 232793743 Query 44111 AATATTTGCAT 44121 ||||| ||||| Sbjct 232793742 AATATCTGCAT 232793732 >seq12 Length=229934170 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||| | ||||||||||| || || ||| || || || ||||| || | Sbjct 186924345 CCCCCCCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTC-TGC 186924403 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | |||| || | |||||| || ||||| ||||| || ||||| || | || Sbjct 186924404 AAGAGTTCTGCCATCCTCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGG 186924463 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| || ||| |||||| | ||| ||||||| ||| || Sbjct 186924464 AATCCCCTCTTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAAC 186924523 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || |||||||| ||||| |||||||| Sbjct 186924524 CTCCAAGGTAATCGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCAT 186924571 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| || || | |||||||| |||| | |||||| | Sbjct 186924643 CATCCTCAAGTTGCTTTCCAGCAAAGATTAATCTCTGCTGGTCTGGAGGAATACCTTCCT 186924702 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || ||| ||| || || | | ||||||| ||| || || | || | Sbjct 186924703 TGTCTTGGATCTTTGCTTTAACATTATCGATGGTATCTGAACTCTCAACCTCCAGAGTGA 186924762 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || ||||| || ||||| ||||||||||||||| Sbjct 186924763 TTGTCTTCCCGGTCAATGTCTTGACAAATATTTGCATG 186924800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770565092796