Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq7 111 1e-19 seq12 84.2 2e-11 >seq3 Length=261510930 Score = 114 bits (126), Expect = 1e-20 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||||| | |||||| ||||| || || | ||||||||||| || Sbjct 37116917 TTAATCATAATTCCTCCTCTGAGCCTCAAAACCAAGTGAAGCATTGATTCTTTTTGAATA 37116976 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | |||| | |||||||||||||||||| || |||| || ||||| Sbjct 37116977 TTGTAATCAGCTAGAGTTCGACCATCTTCCAATTGTTTGCCACCAAAAATTAGTCTCTGC 37117036 Query 20090 TGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCG 20149 ||||||| || | ||||||||||| |||||| || || | | | | ||| Sbjct 37117037 TGATCGAGAGGTATCCCTTCTTTGTCTTGAATTTTGGCCTTGACATTGTCGATCATGTCG 37117096 Query 20150 CCAGGTTCCGTTTCC-ACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | | || |||| | ||| |||||||| | ||| | |||||||| || || | ||| Sbjct 37117097 CTACTTTTGACTTCCAAGGGTGATGGTTTTCCTGGTTAGTGTTTTGACGAAGATCTACAT 37117156 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| | |||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 37145357 TTCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGAATATTGTAATCAG 37145416 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG- 20098 | | |||| ||||||||| |||||||| || |||| || || | || || ||| Sbjct 37145417 CTAGAGTTCGGCCATCTTCCAACTGTTTGCCACCAAAAATTAGTCTTTACTGGTC-ACGC 37145475 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | || |||||||| |||||| || || | | | | | |||| | ||| Sbjct 37145476 GGTATTCCGTCTTTGTCCTGAATTTTGGCCTTGACATTGTCGATTGTGTCGCTACTTTCG 37145535 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||||||||| || ||||| | || ||||| || || ||||| Sbjct 37145536 ACTTCAAGGGTAATGGTCTTCCCGGTTAGAGTCTTGACGAAGATCTGCAT 37145585 >seq7 Length=222112641 Score = 111 bits (122), Expect = 1e-19 Identities = 113/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||||| | |||||| ||||| || ||||| |||||||| || || Sbjct 220953967 TTAATCATAGTTCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATA 220954026 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| |||||||| ||| |||| |||||||| Sbjct 220954027 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTGCCAGCAAAAATTAGCCTCTGC 220954086 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 220954087 TGGTCAGGAGGTATCCCTTCTTTGTC 220954112 >seq12 Length=229934170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 |||||||||||| || || || || || || ||||| || || | | |||| | ||| Sbjct 186924359 CAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAGTTCTGCCATC 186924418 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || | |||||| || ||| |||| | | ||| ||||| ||| | || |||||||| Sbjct 186924419 CTCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGGAATCCCCTCTTTGTC 186924478 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || ||| ||| || | | ||| | ||| | || |||| |||||| || Sbjct 186924479 TTGGATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCAAGGTAATCGT 186924538 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || ||||| || || ||||||||||||||| Sbjct 186924539 CTTCCCAGTCAAAGTCTTAACAAAAATTTGCATT 186924572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419578879979187