Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 8e-16 seq1308 91.5 1e-13 seq8 84.2 2e-11 >seq12 Length=229934170 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | | || | ||||| |||||| Sbjct 3485395 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTCCGGCCATCCTCGAGCTGC 3485454 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || |||| || | |||||| ||| ||| | | ||||||||| ||| || Sbjct 3485455 TTACCTGCGAAAATCAACCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTG 3485514 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| |||| ||||| ||| | || || || ||||| | Sbjct 3485515 GTCTTGACGTTGTCG--ATGGTGTCGGATGACTCTACCTCTAAGGTAATAGTCTTACCCG 3485572 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || |||||||| |||||||| Sbjct 3485573 TCAGGGTCTTCACAAAGATCTGCAT 3485597 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| ||||| | | ||| | ||||| ||||| Sbjct 3077649 ATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGACCATCCTCGAGCTG 3077708 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || |||| || | |||||| || || | | |||||||||| ||| || Sbjct 3077709 CTTACCTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTT 3077768 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| || | ||||| ||| | || || || || || || Sbjct 3077769 GGTCTTAACATTGTCGATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGT 3077828 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 3077829 CAGGGTCTTCACAAAGATCTGCAT 3077852 >seq1308 Length=1742971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||| | ||| ||||| || || |||||| || |||||||| ||||| Sbjct 184297 CCACCACGTAGCCTCAGCACCAAATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCG 184238 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| |||| || || ||||| ||| || | || || | |||||| || || Sbjct 184237 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 184178 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| || ||| || ||||| | | ||||| |||| ||| | Sbjct 184177 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCCACC 184118 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || ||||| || |||||||||||||||||||| ||||||||| Sbjct 184117 TCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 184070 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| ||||||||||| |||| ||| || ||| | ||||| |||||||| || || | Sbjct 185173 TCCTTCTGAATGTTGTAGTCAG-CAAGGGTACGCCCATCCTCGAGCTGCTTGCCAGCGAA 185115 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | || ||||||||| || || |||| | Sbjct 185114 AATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCTTTGACATT 185055 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||| ||| | || ||||| || || ||||| || || || Sbjct 185054 GTCGATGGTGTCGGAGCTCTCAACCTCCAGGGTAATGGTCTTCCCAGTGAGGGTCTTGAC 184995 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 184994 AAAGATCTGCAT 184983 >seq8 Length=153299543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| ||||| |||||||||||||| || || || |||| || Sbjct 133642810 CACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCTAAAGTACGGCCGTCATC 133642869 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| | | || || | |||||||| || | | |||||||||| Sbjct 133642870 AAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTG 133642929 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | ||||| || | ||| ||||| || ||||| || Sbjct 133642930 GATCTTAGCCTTAACGTTATCAATGGTGTCTGAGCTTTCCACCTCGAGGGTGATGGTCTT 133642989 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||||||||| ||||||||| Sbjct 133642990 TCCGGTCAGGGTTTTCACAAAGATCTGCATC 133643020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421242846983627