Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 116 2e-21 seq8 113 2e-20 seq10 111 8e-20 seq7 111 8e-20 seq6 109 3e-19 seq2 107 1e-18 seq5 105 3e-18 seq11 104 1e-17 >seq3 Length=261510930 Score = 116 bits (128), Expect = 2e-21 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 12098157 AAAACAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 12098098 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||||||||| Sbjct 12098097 CTAACCAACTGAGCTAATGGGCC 12098075 >seq8 Length=153299543 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 138656260 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 138656319 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 138656320 TGAGCTAATGGGCCGT 138656335 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||| |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 146781629 AAAAAATAGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 146781687 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||| | |||||||||||||||||||| Sbjct 146781688 GCTTTAACCAACTGAGCTAATGGGCC 146781713 >seq10 Length=205736368 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 126148998 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 126149057 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 126149058 CAACTGAGCTAATGGGCC 126149075 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 |||| |||| |||||||| | | || ||| | ||||||||||||||||||||| ||||| Sbjct 148727123 AAATAAAAT-GGCCCATGCAGGTCTCAAACTTGCGACCTTCGCGTTATTAGCACAACGCT 148727181 Query 11507 CTRACCAACTGAGCTAATGGGCCGT 11531 || ||||||||||||||||| |||| Sbjct 148727182 CTAACCAACTGAGCTAATGGACCGT 148727206 >seq7 Length=222112641 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1641181 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1641240 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 1641241 CTGAGCTAATGGGCC 1641255 >seq6 Length=219521584 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3230665 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3230606 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3230605 TGAGCTAATGGGCC 3230592 >seq2 Length=163962470 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || || |||||||| | | |||||||| ||||||||||||||||||| ||||| Sbjct 147312753 AAAATAAACTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCCCGACG 147312694 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 147312693 CTCTAACCAACTGAGCTAATGGGCC 147312669 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| ||| | | | |||||| ||||||||||||||||| ||| ||||||| ||||| Sbjct 68170916 TTGGCCTATGCAGGTCTAGAACCTGCGACCTTCGCGTTATTAACACAACGCTCTAACCAA 68170975 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 68170976 CTGAGCTAATGGGCC 68170990 >seq5 Length=217274494 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||| ||||||||| ||||| Sbjct 201568131 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCCCGACGCTCTAACCAA 201568190 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 201568191 CTGAGCTAATGGGCC 201568205 >seq11 Length=220335243 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 215779346 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAACCAAC 215779405 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 215779406 TGAGCTAATGGGCC 215779419 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||||| | | ||||||||| | |||||||| ||| ||| |||||||||||| Sbjct 182810839 AATTAAAAATGGAGAGTGGCCCATGCAGATCTCGAACCTGCGAACTTTGCGTTATTAGCA 182810780 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||||||||||||| Sbjct 182810779 TGACACTCTAACCAACTGAGCTAATGGGCC 182810750 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486014874652