Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 147 3e-31 seq11 105 1e-18 seq5 91.5 2e-14 >seq6 Length=219521584 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||||||||||||||||||||| || ||| | || |||||| | ||||| || Sbjct 201395428 GACAACATCCAAGGAATCACCAAGCCAGCAATTCGTAGGCTCGCTCGTAGGGGTGGTGTG 201395369 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| ||| | || || |||| ||||| |||| |||||||||| | || Sbjct 201395368 AAGCGTATTTCTGGGTTGATTTACGAGGAGACTCGTGGTGTTCTGAAGATCTTTTTGGAG 201395309 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || |||||||||| | |||||||| || | Sbjct 201395308 AATGTGATTCGTGATGCAGTGACATACACAGAGCACGCTAGGAGAAAGACTGTTACTGCT 201395249 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | ||||| | | ||||||| ||||| |||| Sbjct 201395248 ATGGATGTTGTTTATGCCCTCAAGAGGCAAGGAAGGACTCTTTATGGATTTGGGGGTTA 201395190 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||||||||||||||||||||| || ||| | || |||||| | ||||| || Sbjct 201404340 GACAACATCCAAGGAATCACCAAGCCAGCAATTCGTAGGCTCGCTCGTAGGGGTGGTGTG 201404281 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| ||| | || || |||| ||||| |||| |||||||||| | || Sbjct 201404280 AAGCGTATTTCTGGGTTGATTTACGAGGAGACTCGTGGTGTTCTGAAGATCTTTTTGGAG 201404221 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||| | | || || |||||||||| | |||||||| || | Sbjct 201404220 AATGTGATTCGTGATTCAGTGACATACACAGAGCACGCTAGGAGAAAGACTGTTACTGCT 201404161 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || |||||| | || | ||||| | | ||||||| ||||| |||| Sbjct 201404160 ATGGATGTTGTTTATGCACTCAAGAGGCAAGGAAGGACTCTTTATGGATTTGGGGGTTA 201404102 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||||||||||||||||||||| || ||| | || |||||| | ||||| || Sbjct 201442727 GACAACATCCAAGGAATCACCAAGCCAGCAATTCGTAGGCTCGCTCGTAGGGGTGGTGTG 201442786 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||| ||| | || || |||| ||||| |||| |||||||||| | || Sbjct 201442787 AAGCGTATTTCTGGGTTGATTTACGAGGAGACTCGTGGTGTTCTGAAGATCTTTTTGGAG 201442846 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||| | | || || |||||||||| | |||||||| || | Sbjct 201442847 AATGTGATTCGTGATTCAGTGACATACACAGAGCACGCTAGGAGAAAGACTGTTACTGCT 201442906 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | ||||| | | ||||||| ||||| |||| Sbjct 201442907 ATGGATGTTGTTTATGCCCTCAAGAGGCAAGGAAGGACTCTTTATGGATTTGGGGGTTA 201442965 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||||||||| |||||||| || ||| | || |||||| | ||||| || Sbjct 201460004 GACAACATCCAAGGAATCACAAAGCCAGCAATTCGTAGACTCGCTCGTAGAGGTGGTGTG 201460063 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | |||||||| | |||||||||| ||||| |||| |||||||||| | || Sbjct 201460064 AAGCGTATTTCTGGATTAATTTATGAAGAGACTCGTGGTGTTCTGAAGATCTTTTTGGAG 201460123 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||| | | || || |||||||||| | |||||||| || | Sbjct 201460124 AATGTGATTCGTGATTCAGTGACATACACAGAGCACGCTAGGAGGAAGACTGTTACTGCT 201460183 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | || || | | ||||||| ||||| |||| Sbjct 201460184 ATGGATGTTGTTTATGCCCTCAAGAGGCAGGGAAGGACTCTTTATGGATTTGGGGGTTA 201460242 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||||||||| ||||||||||| ||| | || |||||| | ||||| || Sbjct 201398845 GACAACATCCAAGGAATCACAAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGTGTG 201398786 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | ||||||||| | || || |||| ||||| ||| ||||||| ||| | || Sbjct 201398785 AAGCGTATTTCTGGATTGATTTACGAGGAGACTCGTGGTGTACTGAAGATTTTCTTGGAG 201398726 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || ||||| |||| | ||||| || || | Sbjct 201398725 AATGTGATACGTGATGCAGTGACATACACAGAGCATGCTAGGAGGAAGACAGTTACTGCT 201398666 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | ||||| | | ||||||| ||||| |||| Sbjct 201398665 ATGGATGTGGTTTATGCCCTCAAGAGGCAAGGAAGAACTCTTTATGGATTTGGGGGTTA 201398607 Score = 134 bits (148), Expect = 2e-27 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||| |||||||| ||||| |||||||||||||| ||| | || ||||| | || Sbjct 6567398 TCTTAGAGACAACATCCAGGGAATTACCAAGCCAGCTATTCGTAGGCTTGCTCGCAGGGG 6567457 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| ||||||| ||| ||||||| |||| |||| ||| | |||||||| Sbjct 6567458 TGGTGTGAAGCGTATCTCTGGTTTGATCTATGAGGAGACCCGTGGAGTTCTTAAGATCTT 6567517 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | |||| | | ||| || ||||| |||| | |||||||| Sbjct 6567518 TTTGGAGAATGTGATTCGTGATTCAGTTACCTACACTGAGCATGCTAGGAGGAAGACTGT 6567577 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || | |||||| | || ||||| Sbjct 6567578 TACTGCTATGGATGTTGTTTATGC 6567601 Score = 129 bits (142), Expect = 9e-26 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| ||||| |||||||||||||| ||| | || |||||| | ||||| | Sbjct 6471332 GAGACAACATCCAGGGAATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGTG 6471391 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| ||||||| || ||||||| |||| ||||| ||| | |||||||| | Sbjct 6471392 TGAAGCGTATCTCTGGTCTGATCTATGAGGAGACTCGTGGAGTTCTCAAGATCTTTTTGG 6471451 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||| | | ||| || ||||| || | | |||||||| || Sbjct 6471452 AGAATGTGATTCGTGATTCAGTTACCTACACTGAGCATGCCAGGAGGAAGACTGTTACTG 6471511 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 6471512 CGATGGATGTTGTTTATGC 6471530 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||||||||| || |||||||| ||| | || |||||| | ||||| || Sbjct 201483124 GACAACATCCAAGGAATCACAAAACCAGCTATTCGTAGGCTCGCTCGTAGAGGTGGTGTG 201483183 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | |||||||| | || || |||| ||||| |||| ||||||| || | || Sbjct 201483184 AAGCGTATTTCTGGATTAATTTACGAGGAGACTCGTGGTGTTCTGAAGATTTTTTTGGAG 201483243 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || ||||| |||| | |||||||| || | Sbjct 201483244 AATGTGATTCGTGATGCAGTGACATACACAGAGCATGCTAGGAGAAAGACTGTTACTGCT 201483303 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | ||||| | | |||| || ||||| |||| Sbjct 201483304 ATGGATGTGGTTTATGCCCTCAAGAGGCAAGGAAGGACTCTTTACGGATTTGGGGGTTA 201483362 Score = 125 bits (138), Expect = 1e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| ||||| ||||||||||| |||||| | || |||||| | ||||| | Sbjct 6585593 GAGACAACATCCAGGGAATTACCAAGCCAGCCATCCGTAGGCTTGCTCGTAGGGGTGGTG 6585652 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || ||||||| |||| ||||| ||| | |||||||| | Sbjct 6585653 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACTCGTGGTGTGCTCAAGATCTTTTTGG 6585712 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | |||| | | ||| || ||||| || | | ||||| || || Sbjct 6585713 AGAACGTGATTCGTGATTCGGTTACCTACACTGAGCATGCCAGGAGGAAGACCGTTACTG 6585772 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 6585773 CTATGGATGTTGTTTATGC 6585791 Score = 120 bits (132), Expect = 5e-23 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| ||||| |||||||||||||| || | || |||||| | ||||| | Sbjct 6495275 GAGACAACATCCAGGGAATTACCAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 6495334 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || |||| || |||| |||| ||| | |||||||| | Sbjct 6495335 TGAAGCGTATCTCCGGTCTGATCTACGAGGAGACCCGTGGAGTTCTCAAGATCTTTTTGG 6495394 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | |||| | | ||| || ||||| |||| | |||||||| || Sbjct 6495395 AGAACGTGATTCGTGATTCAGTTACCTACACTGAGCATGCTAGGAGGAAGACTGTTACTG 6495454 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 6495455 CTATGGATGTTGTTTATGC 6495473 Score = 116 bits (128), Expect = 6e-22 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| ||||| |||||||||||||| ||| | || |||||| | ||||| | Sbjct 6590585 GAGACAACATCCAGGGAATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGGGGTGGTG 6590644 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || |||| || || | |||| ||| | |||||||| | Sbjct 6590645 TGAAGCGTATCTCCGGTCTGATCTACGAGGAAACCCGTGGAGTTCTCAAGATCTTTTTGG 6590704 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | |||| | | ||| || ||||| || | | |||||||| || Sbjct 6590705 AGAACGTGATTCGTGATTCAGTTACCTACACTGAGCATGCCAGGAGGAAGACTGTTACTG 6590764 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 6590765 CTATGGATGTTGTTTATGC 6590783 >seq11 Length=220335243 Score = 105 bits (116), Expect = 1e-18 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||| || || || || || ||||||||||| | || |||| ||| | || Sbjct 29263068 TCTCCGTGATAATATTCAGGGTATTACTAAGCCAGCTATTAGGCGATTGGCACGTAGAGG 29263009 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| | |||| | |||| || |||| |||| ||| |||||||| || Sbjct 29263008 AGGTGTTAAGCGTATAAGTGGACTAATCTACGAGGAGACACGTGGTGTGTTGAAGATATT 29262949 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | |||| || | ||||| ||||| |||| | || ||||| Sbjct 29262948 TTTGGAGAATGTGATACGTGATTCTGTTACTTATACTGAGCATGCTAGGAGGAAAACTGT 29262889 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||||||||| | ||||| | | | ||||| ||||| Sbjct 29262888 TACTGCTATGGATGTTGTTTATGCATTGAAGAGGCAAGGAAGGACTCTCTATGGATTTGG 29262829 Query 16693 AAGTTA 16698 |||| Sbjct 29262828 TGGTTA 29262823 Score = 98.7 bits (108), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || |||||||| |||||||||||| | || |||||| | | || Sbjct 63267558 CTCCGTGATAACATTCA-GGAATCACAAAGCCAGCTATCAGGTGTTTGGCTCATAGAGGA 63267616 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||| | || ||| | ||||||| |||| | ||| ||| | ||||| || Sbjct 63267617 GGAGTGAAGCTTATCAGTGGTCTTTTCTATGAGGAGACTTGTGGGGTTCTCAAGATGATC 63267676 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||||| | ||||| ||| | || || | |||||||| Sbjct 63267677 TTGGAGAATGTGATTCGTGATGCTGTTACTTATACTGAGGATGCCAAGAGGAAGACTGTG 63267736 Query 16634 ACCTCCATGGATATCGTCTATGCA 16657 || |||||| | || |||||| Sbjct 63267737 ACTGGTATGGATGTTGTGTATGCA 63267760 >seq5 Length=217274494 Score = 91.5 bits (100), Expect = 2e-14 Identities = 181/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||||| || ||||| || |||||||||||||| || || Sbjct 7840254 GCAAAGCGTCACCGTAAGGTGCTTCGTGACAACATTCAGGGAATCACCAAGCCGGCGATT 7840195 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | || || | | |||||||| ||| | || ||| || | || || |||| Sbjct 7840194 AGGAGGCTAGCGAGGAGAGGTGGAGTGAAGAGAATCAGTGGGCTGATTTACGAGGAGACA 7840135 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||||||||| | ||| || || | |||| | | ||||| ||| Sbjct 7840134 CGGGGAGTGTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCAGTGACTTATACTGAG 7840075 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| | || | || || Sbjct 7840074 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTCTCAAGAGACAGGGG 7840015 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | ||||||| ||||| |||||| Sbjct 7840014 CGGACCCTTTATGGGTTTGGCGGTTAAT 7839987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073712422511