Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-27 >seq2 Length=163962470 Score = 136 bits (150), Expect = 4e-27 Identities = 304/453 (67%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | |||||| || || || ||||| ||||| |||| || || Sbjct 163233574 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGTAAGCTAATCAG 163233515 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| ||||||||||||| | | ||| | || || | | |||||| | ||| Sbjct 163233514 CTCCATCCAATCAAATGGATTCTGTGCATTATACATCTTCTCATAACCCAAAGCGTCTAA 163233455 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||||| || |||||||| || |||| || ||| || || | |||||| || | ||| Sbjct 163233454 CAATCTATCAGCCACAAATTCAATGTATTTACTCATCAAATCTCCATTCATTCCCACCAA 163233395 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA---ACAAT 21420 ||| | || | || ||| |||||||| ||||| ||| ||||| Sbjct 163233394 AGCACAAGGCAAGGCATCACACACAAACTCCCTTTCTATATCCACGGCGTCAGCAACAAT 163233335 Query 21421 TATATTTATTA--TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478 | | | | ||| | | || | | | || ||| | | ||| || Sbjct 163233334 TCCCCTCACTCGCTCCACGGAGAGCTTCGTCCTCAGCA-AACTGT----AAAGCAAGCAA 163233280 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| ||||||||||| ||||| || || ||||| || || ||||| || Sbjct 163233279 GCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTTAATCCA 163233220 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 |||||||| ||||||||||| ||||||||||| || || ||| || |||||||| Sbjct 163233219 GGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAGAAAATC 163233160 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCA 21631 || ||||| |||||| || || || || ||| Sbjct 163233159 CCTTCAACACAAGCAAAAGCCACCAAACGCTCA 163233127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531889982467480