Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq777 104 2e-17 seq1308 87.8 2e-12 seq12 86.0 6e-12 seq7 84.2 2e-11 >seq3 Length=261510930 Score = 118 bits (130), Expect = 1e-21 Identities = 169/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCG-AATTAGAATCAAACGACACCAT 26836 || || |||||| |||| | ||| | |||||| | | || | || | ||||| || Sbjct 37117147 TTCGTCAAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAAGTAGCGACATGAT 37117088 Query 26837 CGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACT 26896 ||| | ||||| || ||| ||||||||||||||||||| |||||| || ||||| Sbjct 37117087 CGACAATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGATCAGCAGAGACT 37117028 Query 26897 CATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAAA 26955 |||| || ||||||||| | ||||||| | ||| | ||| || || || ||||||| Sbjct 37117027 AATTTTTGGTGGCAAACAATTGGAAGATGGTCGAACTCT-AGCTGATTACAATATTCAAA 37116969 Query 26956 AAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAATATGATTA 27008 ||||||| | | || |||| |||| || |||||||| || |||||||| Sbjct 37116968 AAGAATCAATGCTTCACTTGGTTTTGAGGCTCAGAGGAGG--AATTATGATTA 37116918 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || |||| || || | || ||| | ||| | ||| | | Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | ||||| || ||| |||||||| || ||||| | || || Sbjct 37145525 GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTGACCAG 37145466 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||||| |||| || |||||||| | ||||||| ||| | ||| || || || Sbjct 37145465 TAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCT-AGCTGATTACAA 37145407 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||||| || | || |||| |||| || |||||||||| Sbjct 37145406 TATTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGGAA 37145357 >seq777 Length=10791 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || ||| | |||||| ||||| | ||||| Sbjct 1527 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACAATCACCCTCGAAGTTGAATCC 1586 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||| || | || || ||||| ||||| ||||| || || || || Sbjct 1587 TCCGACACCATTGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGAC 1646 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | || |||| || ||| || ||||||||||||| | | || |||||| Sbjct 1647 CAACAACGTCTAATTTTCGCCGGAAAGCAACTCGAAGATGGCCGTACACTCGCCGACTAC 1706 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | |||||||| || Sbjct 1707 AACATCCAGAAGGAGTCAACACTGCATCTGGTGCT 1741 >seq1308 Length=1742971 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | || ||||| | |||||| | || | ||| | Sbjct 184071 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTGGAAAGCTCC 184130 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| || || || || || || || || || Sbjct 184131 GACACCATCGACAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCAGACCAG 184190 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || ||| || ||||||||||| | ||| | || ||||| ||| Sbjct 184191 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGAACCCTCGCTGACTACAAC 184250 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || || || ||||| ||||| |||| ||||| || Sbjct 184251 ATCCAGAAGGAGTCTACGCTCCATTTGGTGCTGAGGCT 184288 >seq12 Length=229934170 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | ||||| || || | || || || | || ||| | || |||| ||| Sbjct 3077855 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 3077796 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | || || |||||| ||||| ||||| || || || || Sbjct 3077795 TCGGACACCATCGACAATGTTAAGACCAAGATTCAGGACAAGGAAGGCATTCCACCAGAC 3077736 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || || || | |||| || || || || ||||| |||| | | ||| ||| ||||| Sbjct 3077735 CAGCAGAGGTTGATTTTCGCAGGTAAGCAGCTCGAGGATGGTCG-AACACTAGCTGACTA 3077677 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| ||||||| ||||| Sbjct 3077676 CAACATCCAGAAGGAGTCCACTCTCCATCTTGTCCT 3077641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCA 26825 ||||||| | ||||| || || || ||||| || |||| ||| | || | ||| | Sbjct 186924572 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACGATTACCTTGGAGGTTGAGAGTTC 186924513 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || ||||| || | |||||| |||||| |||||||| ||||| || || ||| Sbjct 186924512 A--GATACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGGATTCCCCCAGAT 186924455 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | | |||| | || |||||||| || |||| |||| | |||||| Sbjct 186924454 CAGCAGCGTTTGATTTTTGCTGGTAAACAACTTGAGGATGGCAGAACTCTTGCAGACTAT 186924395 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGT 26977 ||||| || || || || ||| ||||| |||| Sbjct 186924394 AACATCCAGAAGGAGTCAACTCTCCATTTGGT 186924363 >seq7 Length=222112641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 26857 TTACC--GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACA 26914 ||||| |||||||||||||||||||| || || || || || |||| | |||||||| Sbjct 220954119 TTACCAGGACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTAATTTTTGCTGGCAAACA 220954060 Query 26915 ACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCT 26974 | ||||||| | ||| | || || || || || |||||||| || | || | Sbjct 220954059 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACTT 220954000 Query 26975 GGTCCTGAGACTTAGAGGAGGAAAAATATGATTA 27008 ||| |||| || |||||||| || |||||||| Sbjct 220953999 GGTTTTGAGGCTCAGAGGAGG--AACTATGATTA 220953968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478652665203440