Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 1e-13 seq8 86.0 2e-11 seq2 86.0 2e-11 >seq12 Length=229934170 Score = 93.3 bits (102), Expect = 1e-13 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || ||||| || | ||| || ||||| | |||||| ||| | Sbjct 176960150 ATGAAAGAGGATAGTATTGAGGGCATATATGATACTCTTAAAGAATGTGCTGCTATAAGC 176960209 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || |||||||||||||| | |||||| | ||||| || | |||||||| Sbjct 176960210 AAATCAGCTGGGGGAATTGGTGTATCTGTGCACAATATACGTGCTACTG-GGAGTTACAT 176960268 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || ||||| | ||||| ||||| ||||| ||| | ||| Sbjct 176960269 TCGTGGAACAAACGGGACA-TCAAATGGAATCGTTCCTATGCTGCGTGTATTTAATGATA 176960327 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| || || | ||||| || || || || | |||||| Sbjct 176960328 CTGCCAGATATTTTGACCAAGGAGGTGGCAAAAG-AAAGGG 176960367 >seq8 Length=153299543 Score = 86.0 bits (94), Expect = 2e-11 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 111689 TCATCTTATG-TGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGC 111747 ||||||| || | ||||||||||| | | ||| ||| || || || |||||||||| Sbjct 148854107 TCATCTTGTGGTTGTAGTTTTATGTAGCCAATGGGGAGCTATCTTGTCAGATGTATCAGC 148854048 Query 111748 GATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTT 111807 ||||||| ||||| ||| | || || || ||||| |||||| ||| || | || || | Sbjct 148854047 GATCTGCCGATATGGGTTTGGGAGTGCCATTTAACATTGCATCTTATGCCTTGCTGACAT 148853988 Query 111808 GCTTAATCGCTCATTTT 111824 || | || |||||| || Sbjct 148853987 GCATGATAGCTCATGTT 148853971 >seq2 Length=163962470 Score = 86.0 bits (94), Expect = 2e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 22765 GGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATT 22824 || || |||| || | ||||||| ||| ||| ||||||| || ||| | | ||| Sbjct 163233401 GGAATGAATGGAGATTTGATGAGTAAATACATTGAATTTGTGGCTGATAGATTGTTAGAC 163233460 Query 22825 TCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATT 22884 | | ||||||| ||| ||||| | ||||||||||| |||||||| || ||| Sbjct 163233461 GCTTTGGGTTATGAGAAGATGTATAATGCACAGAATCCATTTGATTGGATGGAGCTGATT 163233520 Query 22885 TCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGT 22944 | |||| ||||| |||||||| || || |||||||| || || || ||||| Sbjct 163233521 AGCTTACAAGGGAAGACGAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGAAAGCTTCA 163233580 Query 22945 GTTATGGATGCATTGAATGATA 22966 |||||| | ||||||| || Sbjct 163233581 GTTATGTCTAGTTTGAATGGTA 163233602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303326430372314