Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq10 100 2e-16 seq8 100 2e-16 seq1308 96.9 3e-15 seq777 96.9 3e-15 seq12 86.0 5e-12 >seq3 Length=261510930 Score = 113 bits (124), Expect = 4e-20 Identities = 167/232 (72%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCG-AAGTCGAGGCCAACGACACCAT 24058 || || |||||| |||| | ||| | || ||| | | ||||| | | ||||| || Sbjct 37117147 TTCGTCAAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAAGTAGCGACATGAT 37117088 Query 24059 CGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACT 24118 ||| | ||||| || ||| ||||||||||| ||||||| |||||| |||||||| Sbjct 37117087 CGACAATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGATCAGCAGAGACT 37117028 Query 24119 GATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAA 24177 |||| || ||||| ||| | ||||||| ||| | ||| ||||| || ||||||| Sbjct 37117027 AATTTTTGGTGGCAAACAATTGGAAGATGGTCGAACTCT-AGCTGATTACAATATTCAAA 37116969 Query 24178 AAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGATT 24229 ||||||| | |||| || || || || | ||||||||| || |||||| Sbjct 37116968 AAGAATCAATGCTTCACTTGGTTTTGAGGCTCAGAGGAGGA--ATTATGATT 37116919 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||| || || | |||||| | |||||||| | | Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| || ||| |||||||| || ||||| | || || Sbjct 37145525 GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTGACCAG 37145466 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 | ||||| |||| || ||||| || | ||||||| | ||| | ||| ||||| || Sbjct 37145465 TAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCT-AGCTGATTACAA 37145407 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||||||| ||| |||| || || || || | ||||||||| Sbjct 37145406 TATTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGGA 37145358 >seq10 Length=205736368 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| |||||||| | || ||| | || || ||| Sbjct 187644461 ATGCAGATTTTCGTTAAGACATTGACTGGAAAGACCATCACCTTGGAGGTTGAGAGTTCA 187644402 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||||||||| || || || || || Sbjct 187644401 GACACCATCGATAATGTGAAAGCAAAGATCCAAGACAAAGAAGGGATTCCACCAGACCAG 187644342 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| | |||||||| || || |||| || | | ||||| ||| Sbjct 187644341 CAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAGGATGGGAGGACTCTTGCTGATTACAAC 187644282 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || ||||| || ||| | ||||| ||| | | |||||||||||| Sbjct 187644281 ATCCAGAAAGAGTCCACACTCCATTTGGTGCTCCGTTTGAGAGGAGGA 187644234 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| || | |||||| | || || || | Sbjct 339121 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCT 339062 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| |||||||| || || || || || || Sbjct 339061 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCGGACCAG 339002 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | ||| ||||| | ||||||| || | | |||||| || Sbjct 339001 CAAAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 338942 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| || ||||| | ||||| || | || ||||| Sbjct 338941 ATTCAAAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 338895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || |||||||||||||| || ||||| ||||||||||| | | || || ||||| ||| Sbjct 3762122 GATAAAGAAGGCATACCGCCTGATCAGCAGAGACTGATATTTGCTGGGAAACAACTGGAA 3762181 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | | ||||| |||||||| |||||||| || ||||| | || | Sbjct 3762182 GATGGTCGAACCTTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTTCTC 3762241 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 3762242 AGGCTCAGGGGAGGAACTATGAT 3762264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || |||||||| | |||||| | || || ||| | Sbjct 187644917 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACTATTACCCTTGAGGTTGAGAGCTCA 187644858 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || ||| ||| ||||| || ||||| ||||| ||||| Sbjct 187644857 GACACTATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGCATTCCTCCAGATCAG 187644798 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | || ||||||||||| |||| | | | | || || || Sbjct 187644797 CAAAGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGTCGTACCCTTGCTGACTACAAT 187644738 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || ||||| || | ||| | ||| | | ||||||| || Sbjct 187644737 ATTCAGAAGGAATCAACCCTCCATCTGGTGCTGCGGCTGAGAGGTGG 187644691 >seq8 Length=153299543 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||| | ||| | || ||| ||||||| ||| || | Sbjct 145827652 ATGCAGATATTCGTGAAAACCCTAATAGAAAAGACCATCACCCTCGAAGTTGAGAGCAGC 145827593 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| || ||| || |||||||||||| || | ||||| Sbjct 145827592 GATACCATCGACAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATAGCTTCTGATCAG 145827533 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||||| | || || || | ||||||| ||| | | | || || ||| Sbjct 145827532 CAGAGACTGATTTTTGCTGGAAAACAGTTGGAAGATGGTCGAACCCTGACTGACTACAAC 145827473 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| |||||||| || |||| Sbjct 145827472 ATTCAGAAAGAATCAACTCTTCA 145827450 >seq1308 Length=1742971 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | |||||| | || || ||| | | Sbjct 184983 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACCCTGGAGGTTGAGAGCTCC 185042 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| || || || || || ||||| Sbjct 185043 GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 185102 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || |||||||| ||||| |||| | | | | || || ||| Sbjct 185103 CAGAGGTTGATTTTCGCTGGCAAGCAGCTCGAGGATGGGCGTACCCTTGCTGACTACAAC 185162 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || |||||||| |||| Sbjct 185163 ATTCAGAAGGAATCTACCCTTCA 185185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | || ||| | || || || | | Sbjct 184071 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTGGAAAGCTCC 184130 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || || || || || || || || Sbjct 184131 GACACCATCGACAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCAGACCAG 184190 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| |||||||||||||| | | ||| | || || || ||| Sbjct 184191 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGAACCCTCGCTGACTACAAC 184250 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || ||||| | ||||| ||| Sbjct 184251 ATCCAGAAGGAGTCTACGCTCCATTTGGTG 184280 >seq777 Length=10791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || ||| | || ||| ||||||| || || Sbjct 1527 AAGATGCAGATCTTCGTGAAAACCCTAACCGGGAAAACAATCACCCTCGAAGTTGAATCC 1586 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||| || | || || ||||| ||||| ||||| || || || || Sbjct 1587 TCCGACACCATTGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGAC 1646 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | || |||| || ||| |||||||||||||||| | | | || ||| || Sbjct 1647 CAACAACGTCTAATTTTCGCCGGAAAGCAACTCGAAGATGGCCGTACACTCGCCGACTAC 1706 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || ||| | ||| | ||| Sbjct 1707 AACATCCAGAAGGAGTCAACACTGCATCTGGTG 1739 >seq12 Length=229934170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || || | || || || | |||||| | || || ||| | Sbjct 3485600 AAAATGCAGATCTTTGTGAAGACCCTGACGGGTAAGACTATTACCTTAGAGGTAGAGTCA 3485541 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| |||||| ||||| |||||||| || || || Sbjct 3485540 TCCGACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGCATCCCGCCGGAC 3485481 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| |||||| || || ||||| ||||| |||| Sbjct 3485480 CAGCAGAGGTTGATTTTCGCAGGTAAGCAGCTCGAGGATG 3485441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429927474772185