Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq8 102 7e-17 seq3 102 7e-17 seq1308 89.7 4e-13 seq10 87.8 2e-12 seq12 86.0 5e-12 >seq8 Length=153299543 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || ||||| || | | ||| ||||| ||| ||||| ||| |||| Sbjct 145827652 ATGCAGATATTCGTGAAAACCCTAATAGAAAAGACCATCACCCTCGAAGTTGAGAGCAGC 145827593 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | |||| || || |||||| |||||||||||| | | |||||| Sbjct 145827592 GATACCATCG-ACAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATAGCTTCTGATCA 145827534 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| |||| ||| || ||||| || ||||||| |||| || | || || || Sbjct 145827533 GCAGAGACTGATTTTTGCTGGAAAACAGTTGGAAGATGGTCGAACCCTGACTGACTACAA 145827474 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||| ||||| || ||| | || | || |||| | | ||||||| Sbjct 145827473 CATTCAGAAAGAATCAACTCTTCACCTTGTTCTGAGGCTCAGGGGAGGAA 145827424 >seq3 Length=261510930 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| || || || || || ||||||||| | ||| || ||| Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || |||||| || ||||| || | || ||| || Sbjct 37145525 GACACAATCG-ACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTGACCA 37145467 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 | ||||||| |||| || |||||||| || ||||||| | ||| | || ||||| || Sbjct 37145466 GTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACAA 37145407 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||| || || | || |||| ||||| | ||||||||| Sbjct 37145406 TATTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGGAA 37145357 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA---GTCC 115342 ||| | || || |||||||| || || | |||||||| ||| | | || | || Sbjct 37117156 ATGTAGATCTTCGTCAAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAAGT-- 37117099 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||||||| || | ||||| || || |||||| || |||||||| | || | || Sbjct 37117098 AGCGACA-TGATCGACAATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGA 37117040 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| ||||| |||| || ||||||||||| ||||||| ||| | || ||||| Sbjct 37117039 TCAGCAGAGACTAATTTTTGGTGGCAAACAATTGGAAGATGGTCGAACTCTAGCTGATTA 37116980 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || ||||||||||| || | | || |||| ||||| | ||||||||| Sbjct 37116979 CAATATTCAAAAAGAATCAATGCTTCACTTGGTTTTGAGGCTCAGAGGAGGAA 37116927 >seq1308 Length=1742971 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || ||||||||||| || |||||| |||| ||| | | Sbjct 184755 ATGCAGATTTTTGTTAAGACCCTCACGGGAAAGACTATTACCCTCGAGGTTGAGAGCTCC 184814 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || ||||| || || || ||| ||||| || || Sbjct 184815 GACAC-CATCGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCA 184873 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||||| ||| || ||||| || || |||| | ||| | || || ||||| Sbjct 184874 GCAGAGGCTTATTTTTGCAGGAAAACAGTTGGAGGATGGCCGCACCCTTGCTGACTATAA 184933 Query 115465 CATTCAAAAAGAGTCTAC 115482 || || ||||| || || Sbjct 184934 TATCCAGAAAGAATCCAC 184951 >seq10 Length=205736368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| || | ||| || |||||| | ||| Sbjct 3762122 GATAAAGAAGGCATACCGCCTGATCAGCAGAGACTGATATTTGCTGGGAAACAACTGGAA 3762181 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACAT 115489 |||| |||| |||| ||||| |||||||| ||||| || ||| | ||| Sbjct 3762182 GATGGTCGAACCTTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCAT 3762232 >seq12 Length=229934170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGA--AACGGAGTCC 115342 ||||||||||||||| || || | || || || || |||||| | || |||| | Sbjct 186924572 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACGATTACCTTGGAGGTTGAGAGTTC 186924513 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | || || || ||||| || ||| ||| || || ||||| || | ||| || Sbjct 186924512 A--GATACCATT-GACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGGATTCCCCCAGA 186924456 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| | | |||| ||| || |||||| | || |||| || ||| | || || || Sbjct 186924455 TCAGCAGCGTTTGATTTTTGCTGGTAAACAACTTGAGGATGGCAGAACTCTTGCAGACTA 186924396 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 |||||| || || ||||| ||| | ||| |||||||| | ||| | || || || Sbjct 186924395 TAACATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTTTGAGGGGGGGGAA 186924342 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGG--AGTCCA 115343 ||||| || ||||||||||| || || || || ||||||||| | ||| | ||| || Sbjct 186925027 ATGCAGATCTTTGTCAAAACACTTACAGGCAAGACCATTACCCTTGAAGTTGAAAGTTCA 186924968 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || || ||||||| ||||| ||||| | || || Sbjct 186924967 GATACA---ATTGACAACGTGAAGGCAAAAATTCAGGATAAGGAAGGGATTCCTCCAGAC 186924911 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| |||| || | || ||||| ||| | || |||| | ||| |||| || || Sbjct 186924910 CAGCAGCGACTGATCTTCGCTGGCAAGCAACTTGAGGATGGAAGGACCCTGGCAGACTAC 186924851 Query 115463 AACATTCAAAAAGAGTCTAC 115482 |||||||| |||||||| || Sbjct 186924850 AACATTCAGAAAGAGTCAAC 186924831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425335565827240