Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1308 118 9e-22 seq777 93.3 3e-14 seq3 87.8 1e-12 seq8 86.0 5e-12 >seq1308 Length=1742971 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || ||||||||||| |||| ||| ||||| |||||||| || ||||||||||| || Sbjct 184298 CCCACCACGTAGCCTCAGCACCAAATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 184239 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | |||| || | ||| || || || | || | || ||| ||||| || Sbjct 184238 GAGGGTTCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 184179 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| || || ||| | ||| || | | | | |||||| | ||| Sbjct 184178 GATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCCAC 184119 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||| || ||||| ||||| |||||||| Sbjct 184118 CTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 184071 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| || || || || || ||||| || | ||| | | |||||||| ||| Sbjct 184957 TGAAGGGTGGATTCTTTCTGGATATTATAGTCAGCAAGGGTGCGGCCATCCTCCAACTGT 184898 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| ||||||||| ||| ||||| || | |||||| ||||| |||| | Sbjct 184897 TTTCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTC 184838 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | ||| || | ||| || || ||||| || Sbjct 184837 GCCTTCACATTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTAATAGTCTTTCCCGTG 184778 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || |||||||||||||| Sbjct 184777 AGGGTCTTAACAAAAATCTGCAT 184755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || || |||||||| |||| ||| | | ||||||| || Sbjct 185413 TGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGCCAAGGTCCTTCCATCCTCCAGCTGC 185354 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| ||||| || | ||||| ||||| ||| | Sbjct 185353 TTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGAATCTTA 185294 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | ||| || | |||||||| ||||| || Sbjct 185293 GCCTTCACATTGTCAATTGTGTCGGAGCTTTCCACCTCGAGAGTGATGGTCTTTCCCGTG 185234 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| ||||||||||| Sbjct 185233 AGGGTCTTGACGAAAATCTGCAT 185211 >seq777 Length=10791 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| || |||||||| || |||||||||||||| | || | | || Sbjct 1741 AGCACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCATCT 1682 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || || |||| || || |||||||| || | || || ||||| Sbjct 1681 TCGAGTTGCTTTCCGGCGAAAATTAGACGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCT 1622 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| || || ||| | |||||| | Sbjct 1621 TGGATCTTGGC--CTTCACATTGTCAATGGTGTCGGAGGATTCAACTTCGAGGGTGATTG 1564 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| ||||| || ||||| || || |||||||| || Sbjct 1563 TTTTCCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 1527 >seq3 Length=261510930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||||| |||| || ||| | || || ||||| || ||||| || || Sbjct 37116929 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCATTGATTCTTTTTGAATATTGTAATCAGCT 37116988 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||||||||||||| || |||| || | ||| || || | ||| Sbjct 37116989 AGAGTTCGACCATCTTCCAATTGTTTGCCACCAAAAATTAGTCTCTGCTGATCGAGAGGT 37117048 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||||| ||| || | | | | |||||| | | Sbjct 37117049 ATCCCTTCTTTGTCTTGAATTTTGGCCTTGACATTGTCGATCATGTCGCTACTTTTGACT 37117108 Query 16889 TCC-ACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||| | ||| || |||||||| || |||| ||| Sbjct 37117109 TCCAAGGGTGATGGTTTTCCTGGTTAGTGTTTTGACGAAGATCTACAT 37117156 >seq8 Length=153299543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| || | || || || || || || || ||||||||||| | | Sbjct 145827426 CCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCAGTC 145827485 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || ||||| ||||| || ||| |||| || | ||| || || || Sbjct 145827486 AGGGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGAAGCT 145827545 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| ||||| || ||||| ||| || | | | | || |||| | ||| | Sbjct 145827546 ATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTGTCGATGGTATCGCTGCTCTCAACT 145827605 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| ||| | | || ||||| || || |||||||| Sbjct 145827606 TCGAGGGTGATGGTCTTTTCTATTAGGGTTTTCACGAATATCTGCAT 145827652 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| || ||||||||||| ||||||||||| |||| || | | || || | || Sbjct 133641677 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCGAGCTGC 133641736 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| ||||| || | |||||| ||||| ||| | Sbjct 133641737 TTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTA 133641796 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||| || |||| |||| |||||||| || || ||| Sbjct 133641797 GTCTTCACATTGTCGATAGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCAGTC 133641856 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||||||||| Sbjct 133641857 AAGGTCTTCACAAAAATCTGCAT 133641879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405079967484730