Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 seq668 98.7 1e-15 >seq2 Length=163962470 Score = 158 bits (174), Expect = 2e-33 Identities = 399/602 (66%), Gaps = 10/602 (2%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || || ||||| ||||| | ||| ||||| || ||| || || || || || || Sbjct 163233286 CAAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGT 163233227 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 | ||| ||||||| || | |||||| | ||||||||| || || |||||| || Sbjct 163233226 TAATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAA 163233167 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA----CCGGCGCTGT 32832 |||||| ||||| || ||||| || | | | ||| || || ||| || | Sbjct 163233166 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAACCT-T 163233108 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 || ||||| ||||||| | |||||||| | || ||||| || ||||| || | Sbjct 163233107 CA---ATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTG 163233051 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | || | ||| ||||||| | ||| || | || | || | || | ||| | Sbjct 163233050 CGCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGT 163232991 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCG 33011 |||| || ||||| || || ||||| || ||||||||||| ||| ||||| | ||||| Sbjct 163232990 ACATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCA-CGCGCCTCA 163232932 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | || || || ||| | || | | || | ||| || || || || || Sbjct 163232931 GCAACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGAT 163232872 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 |||||||| ||||| | || || | ||||| | |||| | | || || || | | Sbjct 163232871 GCTGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCC 163232812 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || | | | |||| |||| ||| |||||||| | |||||||| |||||| || Sbjct 163232811 CAGTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCT 163232752 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 || |||||||| | ||| || | |||| |||||||| || ||| |||| || ||| Sbjct 163232751 TTCTTATACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGG 163232692 Query 33252 TT 33253 || Sbjct 163232691 TT 163232690 >seq668 Length=133065 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| || || | |||| ||| |||| |||| | || | | ||| |||||||| ||| Sbjct 39893 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAATACACGTAGCATGGGAATAATTCCA 39952 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| ||||| ||||| || ||| | |||||||||| | ||| Sbjct 39953 TTTGATGTCCCATTTGTCCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 40012 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || ||||| || || |||| || | || || || | |||||||| ||| Sbjct 40013 ACTCCAATTCCTCCAGCAGATTTACTAATAACAGCACACTCCTTAAGAGTATCATATATG 40072 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| ||||||||||| ||||| | || || |||||| Sbjct 40073 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 40114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619113509200