Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 214 2e-50 seq5 91.5 2e-13 seq8 89.7 6e-13 seq4 89.7 6e-13 seq1 86.0 7e-12 seq3 82.4 9e-11 >seq2 Length=163962470 Score = 214 bits (236), Expect = 2e-50 Identities = 594/895 (66%), Gaps = 17/895 (2%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || ||||||||| | || ||||||||||| ||||| |||| || ||| Sbjct 163233574 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGTAAGCTAATCAG 163233515 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | | |||||||| || ||||| ||| ||| ||| ||| || Sbjct 163233514 CTCCATCCAATCAAATGGATTCTGTGCATTATACATCTTCTCATAACCCAAAGCGTCTAA 163233455 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||||||||||| |||||||| ||||| | | ||||||||| | ||||||||| | | Sbjct 163233454 CAATCTATCAGCCACAAATTCAATGTATTTACTCATCAAATCTCCATTCATTCCCACCAA 163233395 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | | ||| || | || || || || || | || || | ||||| || | | Sbjct 163233394 A-GCACAAGGCAAGGCATCACACACAAACTCCCTTTCTATATCCACGGCGTCAGCAACAA 163233336 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCA 93097 || | | |||| || || | || || | | || |||| | ||||| ||| Sbjct 163233335 TTCCCCTCACTCG-CTCCACGGAGAGCTTCGTCCTCAGCAAACTGTAAAGCAAGCAAGCA 163233277 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || || ||||||||||| | || ||||||||||| ||| ||||| || || Sbjct 163233276 AAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTTAATCCAGGC 163233217 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | | |||| || || | ||||||||| ||| ||||| ||||| || || || ||| Sbjct 163233216 ATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAGAAAATCCCT 163233157 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || ||||| ||||| | ||| || |||||| | | ||| || | ||||| Sbjct 163233156 TCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAAC--CTTCA-ATCCAA 163233100 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | |||||| | || || |||| || ||||| | || || || ||| || | Sbjct 163233099 CGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGCGCGGAACAAC 163233040 Query 93338 -TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | ||| || || ||||| ||||| | || | | || | ||||| ||||| Sbjct 163233039 CTGTTCTTT-TCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCAGA 163232981 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||||| |||||| || |||||||| ||||| |||||| | || || | | ||||| Sbjct 163232980 ATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCAGCAACTTGCAC 163232921 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||| || ||| | ||||||| || || |||||||| ||||||||||| || Sbjct 163232920 ATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGATGCTGCAAAGAA 163232861 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGAT 93574 || | | || | ||||| || | ||| | | || || ||||| | ||| | Sbjct 163232860 CGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCCCAGTGACGGGT 163232801 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || | |||||||||||| |||||||||| ||||| ||||| || ||| Sbjct 163232800 A--TCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCTTTCTTATAC 163232743 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688 || ||||| || | | |||| |||||||| || || ||| || |||| |||||| Sbjct 163232742 ATTTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 163232689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 145661371 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 145661314 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 145661313 CGTGGGTTCAAATCCCACTTCTGACA 145661288 >seq5 Length=217274494 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | Sbjct 195283710 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGG 195283651 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||| || ||||| |||||||||| ||| Sbjct 195283650 CGTGGGTTCAAATCCCACTTCTGACAAATTTTTA 195283617 >seq8 Length=153299543 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 140873271 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 140873328 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 140873329 GCGTGGGTTCAAATCCCACTTCTGACAAA 140873357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 125174310 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 125174367 Query 126328 TTCGAACCCCACACCTGACAAATTATTA 126355 ||| || |||||| ||| ||| || ||| Sbjct 125174368 TTCAAATCCCACAGCTGTCAATTTTTTA 125174395 >seq4 Length=215701946 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/109 (79%), Gaps = 6/109 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 201477593 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 201477650 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||| || ||||| |||||| |||| || |||||||| Sbjct 201477651 GCGTGGGTTCAAATCCCACTTCTGACATTTTATGTTTTATTTTTTTGTT 201477699 >seq1 Length=301019445 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2114231 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 2114288 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 2114289 CGTGGGTTCAAATCCCACTTCTGACAA 2114315 >seq3 Length=261510930 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 15913537 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 15913480 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATT 126354 |||||| || |||||| ||| || |||| || Sbjct 15913479 GGGTTCAAATCCCACAGCTGTCACAATTTTT 15913449 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 17705985 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 17706042 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 17706043 TTCAAATCCCACAGCTGTCATATTTTT 17706069 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 52056348 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 52056405 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 52056406 GCGTGGGTTCAAATCCCACTTCTGACA 52056432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849474843480