Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq7 91.5 1e-13 seq12 86.0 5e-12 >seq3 Length=261510930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGT-GGAAACGGAACCCAG 111245 ||| | || || |||||||| | ||| | |||||||| ||| | |||| || || Sbjct 37117156 ATGTAGATCTTCGTCAAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAAGTAG 37117097 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | | || || |||||| ||||||||||| | || ||||||| Sbjct 37117096 CGACATGATCGACAATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGATCA 37117037 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || || || |||| || |||||||||||||||||| | |||| | || ||||| || Sbjct 37117036 GCAGAGACTAATTTTTGGTGGCAAACAATTGGAAGATGGTCGAACTCTAGCTGATTACAA 37116977 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| ||||||||||| | || || || || ||| Sbjct 37116976 TATTCAAAAAGAATCAATGCTTCACTTGGTTTTG 37116943 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || ||||| || | ||||| || ||||||||| | ||| ||| ||| Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCC-CGTCGATCA 111305 || | | | | | || || |||||| |||||||| || | || ||| || || Sbjct 37145525 GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGT-GACCA 37145467 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||| || |||| || |||||||| ||||||||| |||| | || ||||| || Sbjct 37145466 GTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACAA 37145407 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| ||||||||||| ||||| || || || ||| Sbjct 37145406 TATTCAAAAAGAATCAACACTTCACTTGGTTTTG 37145373 >seq7 Length=222112641 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| | || || || || ||||| |||| ||| |||||||| |||||| Sbjct 220954112 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTAATTTTTGCTGGCAAACAGTTGGAA 220954053 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| | |||| |||| ||||| ||||| || |||||||| ||||| || || || ||| Sbjct 220954052 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 220953993 >seq12 Length=229934170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || |||| || || || |||||| |||| || Sbjct 186924572 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACGATTACCTTGGAGGTTGAGAGTTC 186924513 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | | || ||| ||| || |||||||| || ||||| ||||| Sbjct 186924512 AGATACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGGATTCCCCCAGATCA 186924453 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | | |||| ||| || |||||| | || ||| | |||| | || || ||||| Sbjct 186924452 GCAGCGTTTGATTTTTGCTGGTAAACAACTTGAGGATGGCAGAACTCTTGCAGACTATAA 186924393 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAAT 111417 || || || || || || || ||||| ||||||||| || | || || ||| Sbjct 186924392 CATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTTTGAGGGGGGGGAAT 186924341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423031611513400