Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 2e-15 seq8 89.7 4e-13 seq3 89.7 4e-13 seq10 86.0 4e-12 seq7 86.0 4e-12 >seq12 Length=229934170 Score = 96.9 bits (106), Expect = 2e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||| | ||||||||||| |||||||| |||||| || || | || |||| Sbjct 117694130 ACCAGCAGAGATTGATCTTTGCTGGGAAACAACTTGAAGATGGAAGGACCCTTGCAGATT 117694189 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 |||| |||||||||||||| || |||||| |||| | ||||| Sbjct 117694190 ACAACATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTTT 117694232 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || ||||| || || || || || || |||| || || Sbjct 186924799 ATGCAAATATTTGTCAAGACATTGACCGGGAAGACAATCACTCTGGAGGTTGAGAGTTCA 186924740 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| ||| || || || || ||| | ||| | |||| Sbjct 186924739 GATACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 186924680 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || ||||| || ||| || || |||| |||||||| Sbjct 186924679 CAGAGATTAATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 186924620 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| || || || Sbjct 186924619 ATTCAGAAAGAATCAACCCTGCA 186924597 >seq8 Length=153299543 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||| | || | ||||| || || ||||| ||||||||| | || |||| | | Sbjct 133642107 ATGCAAGTCTTCGTGAAAACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCC 133642048 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| || ||| || |||||||| | || | | || Sbjct 133642047 GACACAATCGACAACGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAG 133641988 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| || || | |||||| | || |||||||||||||| Sbjct 133641987 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGACGGACACTGGCCGATTACAAT 133641928 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||||||||| || |||||| | || || Sbjct 133641927 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 133641896 >seq3 Length=261510930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 21849 AAAACATTAACGGGCAAAACCATTACCGTGGAAA--CGGAAGCCGCAGAAACGGTGGCCG 21906 |||||| |||| | |||||||| ||| | | || | ||| || || | | | | | Sbjct 37117141 AAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAAGTAGC-GACATGATCGACA 37117083 Query 21907 ATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCT 21966 || | ||| |||||| || ||||| || ||||| | | || |||||||| || | Sbjct 37117082 ATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGATCAGCAGAGACTAATTT 37117023 Query 21967 TTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAAT 22026 ||| |||||||||| | |||||| |||| | || |||||||||||||| || |||| Sbjct 37117022 TTGGTGGCAAACAATTGGAAGATGGTCGAACTCTAGCTGATTACAATATTCAAAAAGAAT 37116963 Query 22027 CTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTA 22066 | | ||||| |||| || | | |||||||| |||| Sbjct 37116962 CAATGCTTCACTTGGTTTTGAGGCTCAGAGGAGGA-ATTA 37116924 Score = 86.0 bits (94), Expect = 4e-12 Identities = 166/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAA-CGGAAGCCGC 21892 ||||| || || | || || |||| || || ||||||||| | ||| || ||| || Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| |||||| || ||||| || |||| |||| Sbjct 37145525 -GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTGACCA 37145467 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 | ||||| || |||| ||||||||| | |||||| |||| | || |||||||| Sbjct 37145466 GTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACAA 37145407 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATA 22072 |||||| || ||||| || ||||| |||| || | | |||||||| |||| || || Sbjct 37145406 TATTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGGA-ATTATTATTA 37145348 Query 22073 A 22073 | Sbjct 37145347 A 37145347 >seq10 Length=205736368 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || ||||| ||||||||| | || |||| | | Sbjct 339121 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCT 339062 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| || ||||||||| | || |||| Sbjct 339061 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCGGACCAG 339002 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || ||||| || || || | |||||| || || |||||||||||||| Sbjct 339001 CAAAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 338942 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||| |||||||| || |||||| | || || Sbjct 338941 ATTCAAAAGGAATCGACCCTTCATCTTGTGTT 338910 >seq7 Length=222112641 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| || ||||| |||| ||||| || || |||||||||||||| | ||| Sbjct 220954112 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTAATTTTTGCTGGCAAACAGTTGGAA 220954053 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| |||| |||| ||||||||||| ||||| ||||| || ||||| |||| || Sbjct 220954052 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 220953993 Query 22047 CGTTTACGAGGAGGA 22061 | | |||||||| Sbjct 220953992 AGGCTCAGAGGAGGA 220953978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358117698720958