Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 118 2e-21 >seq2 Length=163962470 Score = 118 bits (130), Expect = 2e-21 Identities = 344/524 (66%), Gaps = 12/524 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||| || || || || || || || ||||| || || ||||||||| Sbjct 163232855 CTTGCGTTCTTTGCAGCATCGGATGGTATCGTTTTGGAGAATCTCGCTGGGAGGTTCATG 163232914 Query 42483 AAAGAGGTGCAGTACTT--TGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| ||||| | || ||||||||| ||| ||||| || || || || || || ||| Sbjct 163232915 AAAGATGTGCA--AGTTGCTGAGGCGCG-TGCTTTCTATGGATTTCAAATTGCTATTGAG 163232971 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 || | || |||||| ||||| ||| | | |||||||| |||| | | || Sbjct 163232972 AATATCCATTCTGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGATGAA 163233031 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 ||| || ||||| || || ||||| || || ||| | ||||||||||| | ||| Sbjct 163233032 AAGAACAGGTTGTTCCGCGCAATTGAGACTATCCCTTGCGTTGAGAAGAAGGCGAAATGG 163233091 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || ||| ||||| || || | || || || | ||| | |||| || ||| | Sbjct 163233092 GCTCTCCGTTGGATTGAAGGTTCGGA---GACTTTTGCTGAGCGTTTGGTGGCTTTTGCT 163233148 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 || || || || |||||||| || ||| || || || ||| | || ||| Sbjct 163233149 TGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGTTCGATATTTTGGTTGAAAAAGAGA 163233208 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | || ||||| ||| | |||||||| || || | || |||||||| || |||| Sbjct 163233209 GGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTGATTTCGAGGGACGAAGGTTTGCAC 163233268 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | || ||||| ||| | || | | || || ||| |||| ||| |||||| Sbjct 163233269 TGTGATTTTGCTTGCTTGCTTTAC---AGTTTGCTGAGGACGAAGCTCTCCGTGGAGCGA 163233325 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || ||| || | | || |||||||| || || | |||||| Sbjct 163233326 GTGAGGGGAATTGTTGCTGACGCCGTGGATATAGAAAGGGAGTT 163233369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319994501520