Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-15 seq8 89.7 4e-13 seq9 84.2 2e-11 >seq10 Length=205736368 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/238 (69%), Gaps = 20/238 (8%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||||||||||||||||||| || || ||||||||||| ||||| || | Sbjct 187644690 ACCACCTCTCAGCCGCAGCACCAGATGGAGGGTTGATTCCTTCTGAATATTGTAGTCAG- 187644748 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| || || | || || | |||||| || ||||| |||| | |||||||| | Sbjct 187644749 CAAGGGTACGACCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAG 187644808 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC-- 34076 | | || ||| |||||| ||||||| |||| ||| | ||| ||| || Sbjct 187644809 GAATGCCCTCCTTGTCCTGAATTTTTGCCTTA---------ACATTGTCAATAGTGTCTG 187644859 Query 34077 -GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || || || ||||| || | |||||||||||||| ||||| Sbjct 187644860 AGCTCTCAACCTCAAGGGTAATAGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 187644917 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || || |||||||| || || ||||||||||||||||| ||| Sbjct 3762255 CCTCCCCTGAGCCTGAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCC 3762196 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || |||| ||| || || ||||||||||| | ||||||||| ||| Sbjct 3762195 AAGGTTCGACCATCTTCCAGTTGTTTCCCAGCAAATATCAGTCTCTGCTGATCAGGCGGT 3762136 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||| ||| Sbjct 3762135 ATGCCTTCTTTATCC 3762121 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||||||||| ||| |||||| ||||||||| || |||||||| || Sbjct 149589394 ACCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGC 149589453 Query 33960 CAATTGTCG-CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| | | || || | |||||| || ||||| |||| ||||||||||| Sbjct 149589454 -AAGGGTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATC 149589507 >seq8 Length=153299543 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| || ||| |||||||| || ||||||||||| |||||||| || Sbjct 133641880 ACCTCCCCTTAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGC 133641939 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | || | || ||||| ||||| || ||||| |||| | |||||||| || Sbjct 133641940 CAGTGTCCGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGATCTGGTGG 133641999 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 | || |||||||||| ||| || ||||| Sbjct 133642000 GATGCCCTCTTTGTCCTGAATCTTGGCCTTAA 133642031 >seq9 Length=238794889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||||||||| ||| |||||| ||||||||| || |||||||| || Sbjct 232658398 ACCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGC 232658339 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | | | || || | |||||| || ||||| |||| ||||||||||| Sbjct 232658338 AAGGCTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATC 232658285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397054526624854