Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 2e-12 seq668 84.2 3e-11 >seq7 Length=222112641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 193/283 (68%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| |||||||| || ||||| ||||| || | ||| ||||| | |||||||||| | Sbjct 203994978 TCAAAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCTCTTTCATCATTCCCT 203994919 Query 10934 GGC---ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 10990 || ||| | | || || || || || || ||||||||||| | || || Sbjct 203994918 CCTCCGATTCCAGTCCCTCTTTGTCGC---CCAACAGCATCAATTTCATCAACAAATACA 203994862 Query 10991 ATACACGGTTGATTTT-CACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGAC 11049 || || || ||||| | || | ||| ||| | ||| ||||||| ||| || || Sbjct 203994861 ATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCTCCAAC 203994803 Query 11050 ACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATT 11108 ||| |||||||| || || || | | | ||| |||| || || || || | || Sbjct 203994802 ACCAACAAACATCTCGACGAATTCTGAACCTGAA-ATTGAGAAAAATGGAACACCCGCTT 203994744 Query 11109 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 |||| || || || || || |||||||||||||| ||||| Sbjct 203994743 CACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCCGTACCAGG 203994701 >seq668 Length=133065 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 |||||||||| ||||||||||||||||| |||||||| || | |||||| ||| || Sbjct 37995 TAGATATTGGATGTGTATGGCTCAAAGCATTCATTGTTTCCAAGAATTTGGCTGGTTGAA 38054 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAG 114027 ||||||||||| || || | ||||| Sbjct 38055 GCTGTGGGCATTGGAGCTACAAGAAG 38080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597341451321160