Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-19 seq777 105 7e-18 seq10 86.0 6e-12 seq8 84.2 2e-11 >seq12 Length=229934170 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||||||||| || ||||| | |||||||||| || ||||| ||||| Sbjct 186924345 CCCCCCCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCA 186924404 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | ||||| ||||||||||| | | | || | |||||| || || || || Sbjct 186924405 AGAGTTCTGCCA-TCCTCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGG 186924463 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| ||| ||| | |||| || | ||| || | ||| | Sbjct 186924464 AATCCCCTCTTTGTCTTGGATCTTTGCTTTGACATTG-TCAATGGTATCTGAACTCTCAA 186924522 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||| || ||||||| ||| || |||||||| ||||| Sbjct 186924523 CCTCCAAGGTAATCGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCAT 186924571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || |||||||| || ||||| | Sbjct 3485404 GACTCCTTCTGGATGTTGTAGTCAGCT-AGTGTCCGGCCATCCTCGAGCTGCTTACCTGC 3485462 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | || | | ||| |||||||| || || ||||| ||||| ||| | || || || | Sbjct 3485463 GAAAATCAACCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTC-TTGAATCTTGGTCTTGA 3485521 Query 138540 --TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||| || | |||||||| ||||| ||||| | || | || ||||| ||||| || Sbjct 3485522 CGTTG-TCGATGGTGTCGGATGACTCTACCTCTAAGGTAATAGTCTTACCCGTCAGGGTC 3485580 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 3485581 TTCACAAAGATCTGCAT 3485597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || |||||||| || ||||| | Sbjct 3077659 GACTCCTTCTGGATGTTGTAGTCAGCT-AGTGTTCGACCATCCTCGAGCTGCTTACCTGC 3077717 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | | ||| ||||| || || || ||||| ||||| ||| | || || ||| Sbjct 3077718 GAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTC-CTGAATCTTGGTCTTAA 3077776 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || || ||||| || Sbjct 3077777 CATTG-TCGATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTC 3077835 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 3077836 TTCACAAAGATCTGCAT 3077852 >seq777 Length=10791 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | ||||| || |||||||| || |||| Sbjct 1725 TTGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCATCTTCGAGTTGCTTTCCGG 1666 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||||||| |||||||| || || || ||||| ||||| ||| || || | Sbjct 1665 CGAAAATTAGACGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTCA 1606 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||||| || || || |||| || | ||||| || || || ||| Sbjct 1605 CATTG-TCAATGGTGTCGGAGGATTCAACTTCGAGGGTGATTGTTTTCCCGGTTAGGGTT 1547 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 1546 TTCACGAAGATCTGCAT 1530 >seq10 Length=205736368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || ||||| | | ||||| || || |||||||| || Sbjct 187644235 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 187644294 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||||| || || || || | | | || | |||||| ||||| || || Sbjct 187644295 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGTGGA 187644354 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| ||| ||| | | || | |||||| | ||| ||| Sbjct 187644355 ATCCCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCGATGGTGTCTGAACTCTCAACC 187644414 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| || || || ||||||||||| Sbjct 187644415 TCCAAGGTGATGGTCTTTCCAGTCAATGTCTTAACGAAAATCTGCAT 187644461 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || |||| || | ||| | | |||| ||||| ||||| |||||||| Sbjct 187644691 CCACCTCTCAGCCGCAGCACCAGATGGAGGGTTGATTCCTTCTGAATATTGTAGTCAGCA 187644750 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||||| || || | | | || | | || || || ||||| Sbjct 187644751 AGGGTACGACCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAGGA 187644810 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| |||||| ||| |||| || | ||||| | ||| | Sbjct 187644811 ATGCCCTCCTTGTC-CTGAATTTTTGCCTTAACATTG-TCAATAGTGTCTGAGCTCTCAA 187644868 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| ||||| ||||| ||||||||| Sbjct 187644869 CCTCAAGGGTAATAGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCATG 187644918 >seq8 Length=153299543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||||| || |||||||| || Sbjct 133642337 CCACCACGAAGACGGAGTACCAAATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 133642396 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || || || || || | | |||| | | || ||||| || || Sbjct 133642397 AGGGTACGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGGTCTGGGGGA 133642456 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | ||||| | | |||||| | || || Sbjct 133642457 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAATATTGT-CAATGGTGTCAGAGCTTTCAAC 133642515 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||||||||||| || ||||| ||||| |||||||| Sbjct 133642516 CTCGAGAGTAATTGTTTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 133642563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252307263440