Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 8e-15 seq12 89.7 4e-13 seq10 89.7 4e-13 >seq3 Length=261510930 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/196 (72%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| ||||| ||||| || | | || |||| ||||||||||| || ||||| Sbjct 37116964 TTCTTTTTGAATATTGTAATCAGCTAGAGTTCGACCATCTTCCAATTGTTTGCCACCAAA 37117023 Query 39588 AATTAAACGCTGCTGATCCGAG-GGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AAT 39644 ||||| | |||||||| |||| |||| ||||||||||| ||||| || || Sbjct 37117024 AATTAGTCTCTGCTGAT-CGAGAGGTATCCCTTCTTTGTCTTGAATTTTGGCCTTGACAT 37117082 Query 39645 CGTCGCTACTGTGTCTGCGCTTTCCACGTCCAA-AGTAATTGTTTTACCCGTTAAAGTTT 39703 |||| | ||| || |||| || ||||| || || ||||| | |||| |||| Sbjct 37117083 TGTCGATCATGTCGCT--ACTTTTGACTTCCAAGGGTGATGGTTTTCCTGGTTAGTGTTT 37117140 Query 39704 TTACGAAGATCTGCAT 39719 | |||||||||| ||| Sbjct 37117141 TGACGAAGATCTACAT 37117156 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/215 (71%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGT 39568 ||||| || ||||| | ||||||||| ||||| ||||| || | | || |||| | Sbjct 37145377 ACCAAGTG--AAGTGTTGATTCTTTTTGAATATTGTAATCAGCTAGAGTTCGGCCATCTT 37145434 Query 39569 CCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGC 39628 |||| ||||| || |||||||||| | | ||| || |||| || |||||||| | Sbjct 37145435 CCAACTGTTTGCCACCAAAAATTAGTCTTTACTGGTCACGCGGTATTCCGTCTTTGTC-C 37145493 Query 39629 ATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 | |||| | || | || |||| | |||||| ||||| || || | ||||| | Sbjct 37145494 TGAATTTTGGCCTTGACATTGTCGAT--TGTGTCGCTACTTTCGACTTCAAGGGTAATGG 37145551 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || |||| ||| || ||||||||||||||| Sbjct 37145552 TCTTCCCGGTTAGAGTCTTGACGAAGATCTGCATG 37145586 >seq12 Length=229934170 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | |||||||| |||||||| | ||| || || || || ||||| || || Sbjct 186924345 CCCCCCCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCA 186924404 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | |||||| || ||||||| |||||||||||||| | ||| Sbjct 186924405 AGAGTTCTGCCATCCTCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGGA 186924464 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || ||| ||| | | | | || |||| || || || Sbjct 186924465 ATCCCCTCTTTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACC 186924524 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || || || || ||||| || || || || ||||| Sbjct 186924525 TCCAAGGTAATCGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCAT 186924571 >seq10 Length=205736368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || |||||||| | ||| ||||| || || || ||||| || Sbjct 187644235 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 187644294 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | || || || ||||||| ||||||||||| || | || Sbjct 187644295 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGTGGA 187644354 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || ||| ||| | | | | ||||||| || || || Sbjct 187644355 ATCCCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCGATGGTGTCTGAACTCTCAACC 187644414 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || || || || ||||| |||||||| Sbjct 187644415 TCCAAGGTGATGGTCTTTCCAGTCAATGTCTTAACGAAAATCTGCAT 187644461 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| ||||| | || | ||| || ||||| ||||| || || || Sbjct 187645146 GCCACCACGCAGACGAAGTACAAGGTGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGC 187645205 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| ||||| ||||||||| | || || || | ||| ||||| | || Sbjct 187645206 AAGAGTTCTACCATCCTCCAACTGTTTCCCGGCGAAGATCAATCTCTGTTGATCTGGAGG 187645265 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || ||||| ||| | | | | ||||| | ||| || || Sbjct 187645266 AATTCCTTCCTTATCTTGGATTTTAGCTTTGACGTTATCAATAGTGTCAGAGCTCTCAAC 187645325 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||||||| || ||||| || ||||| || |||||||||||| Sbjct 187645326 CTCAAGAGTAATTGTCTTCCCCGTCAATGTTTTCACAAAGATCTGCATG 187645374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347362711986491