Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 seq4 120 4e-22 >seq7 Length=222112641 Score = 150 bits (166), Expect = 2e-31 Identities = 313/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 ||||||||| ||||| | || | || ||| || ||||| | ||||| ||||| || Sbjct 203995063 ATCAAAGCGTCCTGGTCTCAGCAAAGCCGAATCGAGAATATCTGCACGATTGGTTGCTGC 203995004 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || ||||||||||||| || ||||| || ||||| Sbjct 203995003 AACAACTATTATACCAGTATTTCCTT--CAAAACCATCCATTTCCGTCAATAGTTGGTTC 203994946 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||| | |||||||||| || | | | | |||| | | ||| || | Sbjct 203994945 AGGGTCTGTTCTCTTTCATCATTCCCT--CCTCCGATTCCAGTCCCTCTTTGTCGCCCAA 203994888 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 16121 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 203994887 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 203994829 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| || || | || | ||| Sbjct 203994828 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCGACGAATTCTGAACCTGAA 203994769 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || || ||||| || Sbjct 203994768 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCC 203994710 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTCCAAAGT 16299 |||||| || ||| | || || ||||| |||||| | | | |||| | || | Sbjct 203994709 CGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCAC-TGCAGTGA 203994651 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | |||||||||| ||| | ||| || |||| ||| Sbjct 203994650 ACCTCTCAGGTTTCTTCAAAAATTCTACAACCTC 203994617 >seq4 Length=215701946 Score = 120 bits (132), Expect = 4e-22 Identities = 237/341 (70%), Gaps = 16/341 (5%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTG--TTTCGTTATCA 15974 |||||| | |||| | ||| ||||| || | |||| || ||| | |||| | | Sbjct 1232241 ATCAAGAACATCAGGCCTATTAGTTGCAGCCAAAACAATAACACCAGAATTTCCAGA--A 1232184 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||| ||||| |||||||| || |||| |||||||| | | Sbjct 1232183 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 1232126 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | || |||| | ||| |||| || |||||||||||||| || || || |||| Sbjct 1232125 CTCCAAGTCCTGCACCTCTCTGCCTTCCTACAGCATCAATCTCATCGATAAACACAATGC 1232066 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 | || ||||| || || ||||| | ||||| || || || | || |||||| Sbjct 1232065 AAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACA 1232010 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || ||||||| ||| ||||| | || || | ||| || || || ||| || |||| Sbjct 1232009 CCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCTTCA 1231950 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| || |||||||| Sbjct 1231949 CCAGCTACAGCTCTAGCTAAAAGTGTCTTCCCAGTACCTGG 1231909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729775651440