Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq7 98.7 1e-15 >seq2 Length=163962470 Score = 118 bits (130), Expect = 1e-21 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| |||| || || | |||||| |||| | ||||||||| | ||||| || Sbjct 163233261 CCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCTCTCTTT 163233202 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || | |||||| || | ||| ||||||||||| ||||| || || || ||||| || ||| Sbjct 163233201 TTCAACCAAAATATCGAACAGAAACTTCCAGAGAAGAAAATCCCTTCAACACAAGCAAAA 163233142 Query 119634 GCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTGGC 119692 || | | |||||||||||||| || || | || | ||| ||||||||| || || Sbjct 163233141 GCCACCAAACGCTCAGCAAAAGTCTCCGAACCT-TCAATCCAACGGAGAGCCCATTTCGC 163233083 Query 119693 CTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTCTTTTCAGCAC 119751 ||| ||| | ||| |||| ||| | || || ||| || || ||||||||| || Sbjct 163233082 CTTCTTCTCAACGCAAGGGATAGTCTCAATTGCGCGGAACAACCTG-TTCTTTTCATCAG 163233024 Query 119752 CATCCTTAATATA 119764 |||||| || || Sbjct 163233023 AATCCTTGATGTA 163233011 >seq7 Length=222112641 Score = 98.7 bits (108), Expect = 1e-15 Identities = 256/385 (66%), Gaps = 14/385 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||| || || ||||| | || | ||| ||| |||||||| |||| || || || || Sbjct 203995063 ATCAAAGCGTCCTGGTCTCAGCAAAGCCGAATCGAGAATATCTGCACGATTGGTTGCTGC 203995004 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 || |||| || ||||| | || ||||| |||||||| || | || ||||| | Sbjct 203995003 AACAACTATTATACCAGTATTTCCTTCAAAACCATCCATTTCCGTCAATAGTTGGTTCAG 203994944 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAACGCTTCTTACCG--- 11679 |||||||| | ||||| || | | || || | || | || || || Sbjct 203994943 GGTCTGTTCTCTTTCATCATTC-----CCT-CCTCCGATTCCAGTCCCTCTTTGTCGCCC 203994890 Query 11680 -ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||||| ||||| ||||| | ||||| || || || || | |||| | ||| Sbjct 203994889 AACAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAA 203994830 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 ||| ||||| || || ||||||||||| || |||||||| ||||| | || | || Sbjct 203994829 AAGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCGACGAATTCTGAACCTGA 203994770 Query 11799 ACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 | | ||| | || |||||| | |||||||| || || || || || ||||| | Sbjct 203994769 A-ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCC 203994711 Query 11858 CCGTACCAGGTGCACCAGCGAGAAG 11882 |||||||||| | |||| | ||||| Sbjct 203994710 CCGTACCAGGAGGACCAACAAGAAG 203994686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964021700600