Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7 147 3e-30 seq4 109 6e-19 seq668 95.1 1e-14 seq12 95.1 1e-14 seq2 86.0 7e-12 >seq7 Length=222112641 Score = 147 bits (162), Expect = 3e-30 Identities = 310/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||||||||| ||||| | || | || ||| || ||||| | ||||| || || || Sbjct 203995063 ATCAAAGCGTCCTGGTCTCAGCAAAGCCGAATCGAGAATATCTGCACGATTGGTTGCTGC 203995004 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || ||||||||||||| || ||||| |||||||| Sbjct 203995003 AACAACTATTATACCAGTATTTCCTT--CAAAACCATCCATTTCCGTCAATAGTTGGTTC 203994946 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||| | |||||||||| || | | | | |||| | | ||| || | Sbjct 203994945 AGGGTCTGTTCTCTTTCATCATTCCCT--CCTCCGATTCCAGTCCCTCTTTGTCGCCCAA 203994888 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 203994887 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAAA 203994828 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| || || | || | ||| Sbjct 203994827 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCGACGAATTCTGAACCTGAA- 203994769 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || || ||||| ||| Sbjct 203994768 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTCTTCCCC 203994709 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAAT-CTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| | || || |||| |||||| | | | |||| | || | | Sbjct 203994708 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCAC-TGCAGTGAA 203994650 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||||||| ||| | ||| || |||| ||| Sbjct 203994649 CCTCTCAGGTTTCTTCAAAAATTCTACAACCTC 203994617 >seq4 Length=215701946 Score = 109 bits (120), Expect = 6e-19 Identities = 231/338 (68%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9281 |||||| | |||| | ||| || || || | |||| || ||| | |||| | | Sbjct 1232241 ATCAAGAACATCAGGCCTATTAGTTGCAGCCAAAACAATAACACCAGAATTTCCAGA--A 1232184 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| || || |||||||| || |||| |||||||| | | Sbjct 1232183 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 1232126 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || |||| | ||| |||| || |||||||||||||| || || ||||| | Sbjct 1232125 CTCCAAGTCCTGCACCTCTCTGCCTTCCTACAGCATCAATCTCATCGATAAACACAATGC 1232066 Query 9400 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 | || | ||| | || | ||||| | ||| | ||| || || |||||||| Sbjct 1232065 AAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCC 1232007 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 ||||||| ||| ||||| | || || | ||| || || || ||| || |||||| Sbjct 1232006 ACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCTTCACCA 1231947 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || | |||| || | ||| ||||| || |||||||| Sbjct 1231946 GCTACAGCTCTAGCTAAAAGTGTCTTCCCAGTACCTGG 1231909 >seq668 Length=133065 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||||| || |||||||| | ||||| ||||| || ||| | |||| Sbjct 38976 ACATATCGTGGAAGAGCAATTGATGCAAGGTTGCACACAGCAGTTTCAGTAGGACTTGTG 39035 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | |||||| ||||||||||| ||| ||| || || || | ||||| |||||| Sbjct 39036 TACTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGTTGGTTG 39095 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| |||| || | ||||| Sbjct 39096 CTTTTTCTGTTACAAGTATCCT 39117 >seq12 Length=229934170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | ||||||||| || || ||| | |||| Sbjct 176961406 ACATATCTTGGTAGAGCAATTGAAGCAAGATTGCAAACCGCAGTTTCAGTTGGACTTGTG 176961347 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| |||||||||||||| ||| ||| || || || | ||||| |||||| Sbjct 176961346 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGTTGGTTG 176961287 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 176961286 CTTTTTCTATTGCAAGAATCCT 176961265 >seq2 Length=163962470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 187/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || | ||| | || | |||||| || ||| ||||| || || || Sbjct 143115722 ATCAAACCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCGATTAGTAGCAGC 143115663 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 ||||||| | || |||||| | ||||||||||||||| || | ||||||||| Sbjct 143115662 AATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATCTCAGTGAGAAGTTGGTTG 143115605 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | ||| || || | ||||||||| || | ||||| | | ||| | || || Sbjct 143115604 AGAGTCTGCTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTCTGCCTCCCAACA 143115545 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||| |||||||| || | || || || ||||| || | | || | Sbjct 143115544 GCATCAATTTCATCAATAAATATTATGCAAGGCGAATTTTGTTTTGCCTTGTTGAATAAG 143115485 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 || | ||| || || || ||||||||||||||||| Sbjct 143115484 TCCCTAACTCTAGAAGCTCCAACACCAACAAACATCTC 143115447 Score = 86.0 bits (94), Expect = 7e-12 Identities = 184/274 (67%), Gaps = 7/274 (3%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || || | ||||| | |||||||||||| || || Sbjct 163233279 GCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTTAATCCA 163233220 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | || | ||| ||||||||| | || | ||||| || |||||||| || Sbjct 163233219 GGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAGAAAATC 163233160 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAA 117451 || || ||||| ||||| || | | ||||| || || | ||| || |||| Sbjct 163233159 CCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAACCT-----TCAA 163233105 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 117511 ||| | |||||||||||||||||||||| || || | ||| | || || | Sbjct 163233104 TCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGCGCGGA 163233045 Query 117512 ATAACTGCTTCTTTTCAGATCCATCCTTAATGTA 117545 | ||| ||||||||| |||||| ||||| Sbjct 163233044 ACAACCTGTTCTTTTCATCAGAATCCTTGATGTA 163233011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968801265480