Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq12 107 2e-18 seq668 98.7 1e-15 >seq2 Length=163962470 Score = 176 bits (194), Expect = 5e-39 Identities = 572/881 (65%), Gaps = 23/881 (3%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || ||||||||||| || || || | ||| | || || Sbjct 163233574 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGTAA-GCTAATCA 163233516 Query 18729 T-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 ||||| ||||||||||||| | | ||||||| || || | | || || | || Sbjct 163233515 GCTCCATCCAATCAAATGGATTCTGTGCATTATACATCTTCTCATAACCCAAAGCGTCTA 163233456 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | |||||| || ||||||| ||| ||| | |||||| ||| | ||||||||| | | Sbjct 163233455 ACAATCTATCAGCCACAAATTCAATGTATTTACTCATCAAATCTCCATTCATTCCCACCA 163233396 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | | ||| | ||||| | ||| || |||||||| || || || | | || Sbjct 163233395 AAGCACAAGGCAAGGCATCACACACAAACTCCCTTTCTATATCCACGGCGTCAGCAACAA 163233336 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGA----AG--ATGTTTAAACATCAAAC 18961 | |||| || | |||| | | | || | | |||| ||| | Sbjct 163233335 TTCCCCTCACTCGCTCCAC----GGAGAGCTTCGTCCTCAGCAAACTGTAAAG--CAAGC 163233282 Query 18962 ATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAAC 19021 | ||||||||||| || | || ||||| || ||||| ||||| || || ||||| | Sbjct 163233281 AAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTTAATC 163233222 Query 19022 CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATA 19081 ||||||| | ||||| ||||| ||||| ||||| ||| || |||||| ||||| | Sbjct 163233221 CAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAGAAAA 163233162 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAA 19141 | ||||| || |||||||| || | | || || | || || | | || Sbjct 163233161 TCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAA---AGTCTCCGAACCTTCAA 163233105 Query 19142 TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAA 19201 |||| || ||||| | |||||||| | || || || || ||||| || | | Sbjct 163233104 TCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGCGCGGA 163233045 Query 19202 ATAGATACATACGC---TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 | | || | | ||||| | ||| || | || | || | || |||||||||| Sbjct 163233044 ACA---ACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACA 163232988 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 | || ||||| ||||| || ||||| || |||||||| || ||| | || || | | Sbjct 163232987 TCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCAGCAA 163232928 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 || || || | || || | | | ||| || ||| || ||||| |||| Sbjct 163232927 CTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGATGCTG 163232868 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAAT 19438 |||| || || | || || | ||||| || ||||| | || || | | | ||| | Sbjct 163232867 CAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCCCAGT 163232808 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | |||| |||||||| ||||||||| | ||||||||||| ||| ||||| | Sbjct 163232807 GACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCTTTCT 163232748 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539 ||||||| | ||| || | |||| || || || || ||| Sbjct 163232747 TATACATTTCCCAAATCTGTGGATACTGAATTGGGAACATA 163232707 >seq12 Length=229934170 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | |||||||||||||| ||| | || | | ||| || || || || Sbjct 176960353 ACCTCCTTGGTCAAAATATCTGGCAGTATCATTAAATACACGCAGCATAGGAACGATTCC 176960294 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | || || ||||| ||| ||||| ||| |||| | |||||| | || Sbjct 176960293 ATTTGATGTCCCGTTTGTTCCACGAATGTAACTCCCAGTAGCACGTATATTGTGCACAGA 176960234 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| ||| |||||| |||||| |||||||| || Sbjct 176960233 TACACCAATTCCCCCAGCTGATTTGCTTATAGCAGCACATTCTTTAAGAGTATCATATAT 176960174 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || |||||||| ||| |||| Sbjct 176960173 GCCCTCAATACTATCCTCTTTCAT 176960150 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | |||||||| |||||||||||||||| | ||||| | || | ||| | Sbjct 176959954 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCATTGAGACATCAAATG 176959895 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | || ||||| || ||||| | ||| || || || | |||||| | ||| | Sbjct 176959894 ATATGTCTTGATGACAGATTCAATATCTTCCTTG-TGGATTCCAACAGATACTCTCATCA 176959836 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||| || ||||| |||||||| | || |||||||| || || | || | Sbjct 176959835 GCATGTGTTGTGGCCTTTCTACAATTTTTCCCTGAATCTTCAAAAGGTAAGACCTCTCAA 176959776 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 ||||| || ||||| || | || |||||| |||||| Sbjct 176959775 GGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCTATCAT 176959734 >seq668 Length=133065 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||||| ||||| | ||| | || | || ||| || | ||| || Sbjct 39892 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAATACACGTAGCATGGGAATAATTCC 39951 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | ||||| || || ||||||||| ||| || | | ||||| | || Sbjct 39952 ATTTGATGTCCCATTTGTCCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGA 40011 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || |||| || | ||||||| ||||| |||||||| || Sbjct 40012 TACTCCAATTCCTCCAGCAGATTTACTAATAACAGCACACTCCTTAAGAGTATCATATAT 40071 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 40072 GCCCTCAATACTATCATCTTTCAT 40095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562097368112280