Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 187 3e-42 seq1 84.2 3e-11 >seq2 Length=163962470 Score = 187 bits (206), Expect = 3e-42 Identities = 401/595 (67%), Gaps = 7/595 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||||||||| || |||||||| || || ||||| ||||| || |||||| Sbjct 163233285 AAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTT 163233226 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 ||||| |||||||| ||||| ||||| | ||||||||| | ||| |||||| ||| Sbjct 163233225 AATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAG 163233166 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT-ATAATC 37351 ||||| |||||||| ||||| || || | ||| | | ||||| || || | Sbjct 163233165 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGT----CTCCGAACC 163233110 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 |||||| | ||| | ||||| | ||| || || || |||||||| Sbjct 163233109 TTCAATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGC 163233050 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || | ||| ||||| ||| ||| | || || | || | || ||||| || Sbjct 163233049 GCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTA 163232990 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 ||| ||||| || ||||| |||||||| || ||||| ||||| ||| | || |||| Sbjct 163232989 CATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCAGC 163232930 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 | ||| ||||| || | |||||| ||| | || || ||| || ||||| || Sbjct 163232929 AACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGATGC 163232870 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCA 37651 ||||||||| ||||| || | | ||||| || |||||| | | | |||| ||| Sbjct 163232869 TGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCCCA 163232810 Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACG 37711 | | |||| |||||||| ||||| ||| | ||||||||| ||||| || Sbjct 163232809 GTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCTTT 163232750 Query 37712 TTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765 |||||||| |||||| | || || ||||| || | |||| |||| ||| Sbjct 163232749 CTTATACATTTCCCAAATCTGTGGATACTGAATTGGGAACA-TACAGAATCGATC 163232696 >seq1 Length=301019445 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| |||||||| | ||| ||||| ||| || | ||||| ||||| || ||| Sbjct 196654323 CAAGCAAAGTCACAATGGAGACCCTCATCCCTAGAAATGAGCTCATTTGAAAAAGTCAAT 196654382 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG 37281 |||||||| |||||||| ||||| | |||||| || || |||||| Sbjct 196654383 CCTGGCATCAAACCTCTCTTTTTCAGCCAAAAGATAGC-ACAAAAG 196654427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592304753757080