Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 104 4e-17 >seq2 Length=163962470 Score = 104 bits (114), Expect = 4e-17 Identities = 293/447 (66%), Gaps = 5/447 (1%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| ||||| || | |||||| |||||||||| || | | | || ||| Sbjct 163233291 TAAAGCAAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAG 163233232 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | |||||||| | ||| |||| ||| | ||| || || | |||| ||| Sbjct 163233231 AAGGTTAATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCA 163233172 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || || || || | | ||| | |||| | | Sbjct 163233171 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTC---C 163233115 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 || ||||| || ||||| | |||||||||| | ||| || || ||||| Sbjct 163233114 GAACCTTCAATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCA 163233055 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 || || ||||| | | | || ||| | | ||| | || | | |||| Sbjct 163233054 ATTGCGCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAA 163232995 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 |||||||||||| || | |||||| ||||| || || || || ||||| || | ||| Sbjct 163232994 CTGTACATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCC 163232935 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540 ||| || ||||| ||| | ||| ||| ||||| |||||||| || || ||||| Sbjct 163232934 TCAGCAACTTGCACATCTTTCATGAACCTC-CCAGCGAGATTCTCCAAAACGATACCATC 163232876 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATG 48567 || || |||||||| ||||| || || Sbjct 163232875 CGATGCTGCAAAGAACGCAAGCACGTG 163232849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513854951680