Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq12 87.8 2e-12 >seq3 Length=261510930 Score = 104 bits (114), Expect = 2e-17 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| | || || || |||||| |||| | |||||||| ||| | || || | | Sbjct 37117156 ATGTAGATCTTCGTCAAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAAGT-A 37117098 Query 28614 GAGAC--GGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 | ||| | | | | || ||||| ||||| |||||||| || | || | |||| Sbjct 37117097 GCGACATGATCGACAATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGATC 37117038 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | |||||||| || |||| |||||||||||||||||| | |||| | || ||||| | Sbjct 37117037 AGCAGAGACTAATTTTTGGTGGCAAACAATTGGAAGATGGTCGAACTCTAGCTGATTACA 37116978 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAAT 28789 | |||||||||||||| | || ||| |||| || || | ||||||| || || || Sbjct 37116977 ATATTCAAAAAGAATCAATGCTTCACTTGGTTTTGAGGCTCAGAGGAGGAATTATGAT 37116920 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || |||| || || ||||||||| ||| ||| | Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCC-CGTAGATCA 28672 || || | | | || ||||| ||||| |||||||| ||| | || ||| || || Sbjct 37145525 GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGT-GACCA 37145467 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | ||||| || |||| |||||||| ||||||||| |||| | || ||||| || Sbjct 37145466 GTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACAA 37145407 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATAAT 28789 |||||||||||||| || || ||| |||| || || | ||||||| || || || Sbjct 37145406 TATTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGGAATTATTAT 37145350 >seq12 Length=229934170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || || || || || || |||||| || || ||| Sbjct 186924572 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACGATTACCTTGGAGGTTGAGAGTTC 186924513 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | || |||| ||| ||| ||||||||||| | ||| |||||| Sbjct 186924512 AGATACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGGATTCCCCCAGATCA 186924453 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || ||||| || |||||| | || ||| | |||| | || || ||||| Sbjct 186924452 GCAGCGTTTGATTTTTGCTGGTAAACAACTTGAGGATGGCAGAACTCTTGCAGACTATAA 186924393 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| || || || || ||||| || |||| || Sbjct 186924392 CATCCAGAAGGAGTCAACTCTCCATTTGGTGTT 186924360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425396364621633