Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq7 113 5e-20 seq4 87.8 2e-12 seq2 86.0 7e-12 >seq7 Length=222112641 Score = 113 bits (124), Expect = 5e-20 Identities = 284/422 (67%), Gaps = 10/422 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| |||| || ||| | ||| |||| ||||| | || | |||| | | | || || Sbjct 203994617 GAGGTTGTAGAATTTTTGAAGAAACCTGAGAGGTTCACTGCA-GTGGGGGCTCGTATTCC 203994675 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || |||||||| |||||||| || || || || Sbjct 203994676 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACGGGGAAGACCCTGCTAGCAAAGGCAAT 203994735 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | || || ||||||| Sbjct 203994736 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTCGTCGAGATGT 203994794 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || || ||||| || | | ||| |||||| | Sbjct 203994795 TTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 203994854 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGC-GGTGGGCAAGCAACGCAGCGCTGG--TG 175525 | || ||||| || ||||||| |||||||| | ||||| | ||| | | |||| | Sbjct 203994855 CCTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGA-CAAAGAGGGACTGGAATC 203994913 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | | || ||||| || |||||||| || | || |||||| | || || ||||||| Sbjct 203994914 GGAGG--AGGGAATGATGAAAGAGAACAGACCCTGAACCAACTATTGACGGAAATGGATG 203994971 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645 | ||||| | ||||| || | ||| |||| || || ||||| | ||||| || | Sbjct 203994972 GTTTTGAAGGAAATACTGGTATAATAGTTGTTGCAGCAACCAATCGTGCAGATATTCTCG 203995031 Query 175646 AT 175647 || Sbjct 203995032 AT 203995033 >seq4 Length=215701946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 241/365 (66%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 175229 AAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCC 175288 |||| | ||||||||| | ||| | || || | ||| || ||||| ||||| | Sbjct 1231823 AAGAAGTGGTGGATTTTTTAAAGAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATAC 1231882 Query 175289 CCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCA 175348 | ||| ||| | | ||| |||||||| || ||||| || | || |||| Sbjct 1231883 CAAAAGGGTGTCTTTTGGTCGGTCCACCAGGTACTGGGAAGACACTTTTAGCTAGAGCTG 1231942 Query 175349 TCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 | || |||||| | ||| ||||| || || | || || | ||||| ||| ||| Sbjct 1231943 TAGCTGGTGAAGCTGGTGTGCCATTTTTCTCTTGTGCAGCATCAGAGTTTGTTGAGTTGT 1232002 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAA 175467 |||| |||||||| || || ||| | ||| | ||||| | || | ||| | Sbjct 1232003 TTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG- 1232061 Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TG 175525 || || ||||| || || |||||||||||||| || || | ||| | | || || | Sbjct 1232062 CCTTGCATTGTGTTTATCGATGAGATTGATGCTGTAGGAAGGCAGAGAGGTGCAGGACTT 1232121 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | | | |||||| ||||| || || || |||||||| || | || || ||||||| Sbjct 1232122 GGAGG--TGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTCTTGACTGAAATGGATG 1232179 Query 175586 GCTTT 175590 | ||| Sbjct 1232180 GGTTT 1232184 >seq2 Length=163962470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 184/274 (67%), Gaps = 7/274 (3%) Strand=Plus/Plus Query 64957 TACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGT 65016 ||||| |||||| ||||||||| ||| || || || | ||| | || || Sbjct 163233011 TACATCAAGGATTCTGATGAAAAGAACAGGTTGTTCCGCGCAATTGAGACTATCCCTTGC 163233070 Query 65017 ATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCG 65074 |||||||||||||||||||||| | ||| |||| || ||| | || | Sbjct 163233071 GTTGAGAAGAAGGCGAAATGGGCTCTCCGTTGGATTGA-----AGGTTCGGAGACTTTTG 163233125 Query 65075 CCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG 65134 | ||||| | | || ||||| ||||| || || || |||||||| || ||||| Sbjct 163233126 CTGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGTT 163233185 Query 65135 CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTA 65194 | || | ||||||||| ||| | || | ||||| || || |||||||||||| | | Sbjct 163233186 CGATATTTTGGTTGAAAAAGAGAGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTGA 163233245 Query 65195 TTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 |||| | || || ||| | ||| || ||||| Sbjct 163233246 TTTCGAGGGACGAAGGTTTGCACTGTGATTTTGC 163233279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596557467265760