Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq10 136 7e-27 seq12 125 1e-23 seq8 114 2e-20 seq9 95.1 2e-14 seq5 89.7 9e-13 >seq10 Length=205736368 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || |||||||| || || | || | ||| || ||||| ||||| Sbjct 187645144 ATGCCACCACGCAGACGAAGTACAAGGTGAAGGGTGGACTCCTTTTGGATATTGTAGTCA 187645203 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||||| ||| || || ||||| ||||| || || |||||||||||||| ||| Sbjct 187645204 GCAAGAGTTCTACCATCCTCCAACTGTTTCCCGGCGAAGATCAATCTCTGTTGATCTGGA 187645263 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||| | ||| | || |||||| || || |||| Sbjct 187645264 GGAATTCCTTCCTTATCTTGGATTTTAGCTTTGACGTTATCAATAGTGTCAGAGCTCTCA 187645323 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || | ||||| ||||| || ||||| Sbjct 187645324 ACCTCAAGAGTAATTGTCTTCCCCGTCAATGTTTTCACAAAGATCTGCAT 187645373 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||| || || || | || | ||| || || || ||||| Sbjct 149571366 ATACCACCTCTAAGCCGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 149571425 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| | ||| |||| || ||||| ||||| || || ||||| || |||||| Sbjct 149571426 GCAAGAGTTCGACCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGA 149571485 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || || | || | ||| ||||| || ||| |||| Sbjct 149571486 GGGATACCTTCCTTATCCTGAATCTTAGCCTTGACATTATCGATAGTGTCCGAACTCTCA 149571545 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || || || || ||||| |||||||| Sbjct 149571546 ACCTCAAGTGTAATGGTCTTACCAGTGAGGGTCTTCACAAAGATTTGCAT 149571595 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || |||||||| | || | || || |||||| ||||| Sbjct 187644688 ATACCACCTCTCAGCCGCAGCACCAGATGGAGGGTTGATTCCTTCTGAATATTGTAGTCA 187644747 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | ||| ||||| |||||||| || || || ||||| ||| Sbjct 187644748 GCAAGGGTACGACCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGA 187644807 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || ||||| | || | ||| |||||| || || |||| Sbjct 187644808 GGAATGCCCTCCTTGTCCTGAATTTTTGCCTTAACATTGTCAATAGTGTCTGAGCTCTCA 187644867 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || | ||||| ||||| || ||||| Sbjct 187644868 ACCTCAAGGGTAATAGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 187644917 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| || || || | || | ||| || || || ||||| Sbjct 187644916 ATGCCACCACGCAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA 187644975 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| ||| || || || ||||| || || || ||||||||||| || ||| Sbjct 187644976 GCAAGAGTTCTTCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCTCTGTTGGTCTGGA 187645035 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||| | || | ||| |||||| || || |||| Sbjct 187645036 GGAATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCA 187645095 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || | ||||| ||||| || ||||| Sbjct 187645096 ACCTCAAGAGTAATTGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCAT 187645145 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| |||| || || |||||||| | || | || || || || || || Sbjct 187644460 ATACCACCCCTCAGGCGCAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCT 187644519 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | ||||| ||||||||||| || || || || || || Sbjct 187644520 GCTAGAGTCCTTCCATCCTCAAGCTGTTTCCCGGCAAAAATCAACCTTTGCTGGTCCGGT 187644579 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||| | || | ||| ||| || || ||| ||| Sbjct 187644580 GGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCAATGGTGTCAGAACTCTCC 187644639 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| | || |||||||| || ||||| Sbjct 187644640 ACCTCAAGGGTGATGGTCTTCCCTGTCAATGTCTTTACAAAGATCTGCAT 187644689 Score = 102 bits (112), Expect = 1e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 193155 AGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAAT 193214 ||||| | |||| ||| || || ||| || || | | |||| | ||| || ||| Sbjct 158025919 AGATGAAGGGTAGACTCCTTTTGAACATTGTAATCAGCAAGTGTTCGACTATCCTCAAAT 158025860 Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| ||||| | |||||||| |||| ||||||||||| ||||| || Sbjct 158025859 TGTTTTCCAGCAAATATTAACTTTTGTTGATCCGGAGAAATTCCTTCTTTGTCTTGAATC 158025800 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| ||| | | |||| ||| || || ||||| || || || || Sbjct 158025799 TTGGCTTTGACATTCTCAATGATGTTGGAACTCTCGACATCAAGAGTAATGGTCTTTCCG 158025740 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | || ||||| |||||||| Sbjct 158025739 TCGAGGATCTTAACAAAGATTTGCAT 158025714 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || |||||||| || |||| ||| | || | ||| || ||||| || || Sbjct 149589392 ATACCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCA 149589451 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | ||| || || ||||| || |||| ||| ||||| || Sbjct 149589452 GCAAGGGTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGT 149589511 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||||||||| || || | || | ||| ||| ||||| ||| ||| Sbjct 149589512 GGAATCCCCTCTTTATCTTGGATCTTCGCCTTCACATTATCAATTGTATCAGAACTCTCG 149589571 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || ||||| ||||| | || || ||||| || ||||| Sbjct 149589572 ACCTCCAAGGTGATGGTTTTCCCTGTCAATGTCTTGACAAAGATCTGCAT 149589621 >seq12 Length=229934170 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||| | ||||| || || |||| || | ||||| ||| || Sbjct 186924563 AATTTGCATTCCACCTCTAAGACGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTT 186924622 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || || ||| || | ||| ||||| ||||| ||||||||||| || Sbjct 186924623 GTAATCCGCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATTAATCTCTGCTG 186924682 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || ||||| || || | ||| | ||| || ||||| || Sbjct 186924683 GTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTATCTGA 186924742 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| || || || || || | || || |||||||||||||| Sbjct 186924743 ACTCTCAACCTCCAGAGTGATTGTCTTCCCGGTCAATGTCTTGACAAATATTTGCAT 186924799 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || || || || | || | ||| || || || ||||| Sbjct 186925026 ATACCACCACGAAGGCGGAGGACAAGGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 186925085 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||||| ||| || | |||||||| ||||| || | ||||| |||||||| Sbjct 186925086 GCAAGTGTTCTACCATCTTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGT 186925145 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 | || || || || ||||| ||||| | ||| | ||| ||| || || || ||| Sbjct 186925146 GAAATGCCCTCCTTGTCTTGAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCG 186925205 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||||||||| || || || || ||||| || |||||||||||| Sbjct 186925206 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACGAATATTTGCATT 186925256 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| || ||||||||||| |||| || || |||||||| || |||||||| || Sbjct 117693726 ATCTTCTAGCTGCTTTCCGGCAAAGATTAGCCTTTGCTGATCAGGTGGAATTCCTTCCTT 117693667 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || |||| || | ||| |||||| |||||| |||||| |||||||| || Sbjct 117693666 ATCTTGAATCTTGGCCTTGACATTAGCAATAGTGTCGGAAATCTCAACCTCTAGAGTAAT 117693607 Query 193325 AGTTTTACCTGTTAG 193339 || || || || || Sbjct 117693606 GGTCTTGCCAGTGAG 117693592 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | |||| |||||| ||||||||||| | | || | ||| Sbjct 186924131 AGAACAAGATGAAGAGTAGACTCTTTCTGGATATTATAGTCCGCAAGGGTGCGGCCATCC 186924190 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || || ||||| || | ||||||||||| || || || || || ||||| Sbjct 186924191 TCAAGCTGCTTACCAGCAAATATGAGCCTCTGTTGATCTGGTGGAATCCCCTCCTTATCC 186924250 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 ||||| || ||||| | ||| |||||||| ||| || || || | || || || Sbjct 186924251 TGTATCTTTGTTTTCACATTGTCGATAGTATCTGAACTTTCCACCTCCAACGTGATTGTC 186924310 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| || || || || || |||||| Sbjct 186924311 TTCCCAGTTAGAGTCTTCACGAAGATCTGCATT 186924343 >seq8 Length=153299543 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| ||| || ||||| | | |||| | ||| || || |||||||| |||||| Sbjct 145827462 TCTTTCTGAATGTTGTAGTCAGTCAGGGTTCGACCATCTTCCAACTGTTTTCCAGCAAAA 145827521 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 || | |||||| ||||||| || ||| ||||||||||| || ||||||| || | ||| Sbjct 145827522 ATCAGTCTCTGCTGATCAGAAGCTATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTG 145827581 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 || |||||| ||||||||| || || || || || || |||| ||||| || Sbjct 145827582 TCGATGGTATCGCTGCTCTCAACTTCGAGGGTGATGGTCTTTTCTATTAGGGTTTTCACG 145827641 Query 193350 AATATTTGCAT 193360 ||||| ||||| Sbjct 145827642 AATATCTGCAT 145827652 >seq9 Length=238794889 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || |||||||| || |||| ||| | || | ||| || ||||| || || Sbjct 232658400 ATACCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCA 232658341 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | | || ||| || | ||| || || ||||| || |||| ||| ||||| || Sbjct 232658340 GCAAGGCTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGT 232658281 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||||||||| || || | || | ||| ||| ||||| ||| ||| Sbjct 232658280 GGAATCCCCTCTTTATCTTGGATCTTCGCCTTCACATTATCAATTGTATCAGAACTCTCG 232658221 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || ||||| ||||| | || || ||||| || ||||| Sbjct 232658220 ACCTCCAAGGTGATGGTTTTCCCTGTCAATGTCTTGACAAAGATCTGCAT 232658171 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | |||| ||||| || ||||| || | | ||| | | | Sbjct 232793946 CGAAGCACAAGGTGAAGGGTAGATTCTTTCTGGATGTTATAATCAGCAAGCGTACGACCA 232793887 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| ||||| ||||| || || || || || ||||||||| Sbjct 232793886 TCCTCCAGCTGCTTGCCAGCAAAGATTAACCTCTGCTGGTCTGGTGGAATACCTTCTTTA 232793827 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | ||| | || ||| ||||| || ||| || || | ||| || Sbjct 232793826 TCCTGAATCTTTGCTTTCACGTTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTGATT 232793767 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || || ||||| ||||| Sbjct 232793766 GTCTTCCCGGTTAGTGTCTTGACGAATATCTGCAT 232793732 >seq5 Length=217274494 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||||||||| | | ||| | ||| || | || || || ||||| || || | | Sbjct 129771670 ATATTATAGTCTGCCAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATATCAAACGC 129771729 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| || ||||| ||||| || || || | || | ||| ||| ||| Sbjct 129771730 TGCTGGTCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATGGTA 129771789 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||| || ||||| || | ||||| || || |||||||| ||||| || || |||||| Sbjct 129771790 TCGCTGGATTCAACCTCAATGGTTATGGTCTTCCCTGTTAGGGTTTTCACGAAGATTTGC 129771849 Query 193359 AT 193360 || Sbjct 129771850 AT 129771851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899636103278640