Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 5e-13 seq9 87.8 2e-11 >seq8 Length=153299543 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| | |||||||| ||||| ||||| || || |||||||| || Sbjct 151735194 GCTGCTAACTATTTGAACATCAAGAGCCTGCTAGATCTCACCTGTCAGACTGTGGCCGAC 151735253 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||| || ||| | || |||||||||||||||||||| ||||||||| Sbjct 151735254 ATGATCAAAGGAAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 151735304 >seq9 Length=238794889 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||| | |||||||| || || |||| || || ||||||| ||| Sbjct 14791895 GCTGCCAACTATTTGAACATCAAGAGCCTTCTAAATCTCACCTGTCAGACTGTGGCTAAC 14791836 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||| || ||| | || |||||||||||||||||||| ||||||||| Sbjct 14791835 ATGATCAAAGGAAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 14791785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107005680760759