Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq12 89.7 4e-13 seq8 86.0 5e-12 >seq3 Length=261510930 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||| ||||||| || ||||||||| | ||| || | | Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCC-CGTGGATCA 110391 || || ||| | | || || || ||| |||||||| || | || |||| | || Sbjct 37145525 GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTG-ACCA 37145467 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||| |||| || || |||||| |||| |||| | |||| | || |||||||| Sbjct 37145466 GTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACAA 37145407 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||| || | ||| |||| || || || |||| |||| Sbjct 37145406 TATTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGGAA 37145357 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || | ||||| || ||||| |||| || || ||||| |||| Sbjct 37117062 GACAAAGAAGGGATACCTCTCGATCAGCAGAGACTAATTTTTGGTGGCAAACAATTGGAA 37117003 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||| | || |||||||| |||||||||||||| | | | ||| |||| || Sbjct 37117002 GATGGTCGAACTCTAGCTGATTACAATATTCAAAAAGAATCAATGCTTCACTTGGTTTTG 37116943 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 37116942 AGGCTCAGAGGAGGAA 37116927 >seq12 Length=229934170 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| || || ||||| || || || || | || ||| | Sbjct 186924799 ATGCAAATATTTGTCAAGACATTGACCGGGAAGACAATCACTCTGGAGGTTGAGAGTTCA 186924740 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || ||| ||||| ||||| ||||| | || || || Sbjct 186924739 GATACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 186924680 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || || || ||||||| || || |||||||||||||| Sbjct 186924679 CAGAGATTAATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 186924620 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| |||||||| || ||||| Sbjct 186924619 ATTCAGAAAGAATCAACCCTGCAC 186924596 >seq8 Length=153299543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || ||||| ||| | || ||||| ||| ||||| ||| | Sbjct 145827652 ATGCAGATATTCGTGAAAACCCTAATAGAAAAGACCATCACCCTCGAAGTTGAGAGCAGC 145827593 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || || ||| || ||||||||| | | ||||| Sbjct 145827592 GATACCATCGACAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATAGCTTCTGATCAG 145827533 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| |||| ||| || |||||| |||| |||| |||| || | || |||||| Sbjct 145827532 CAGAGACTGATTTTTGCTGGAAAACAGTTGGAAGATGGTCGAACCCTGACTGACTACAAC 145827473 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| |||||||| || Sbjct 145827472 ATTCAGAAAGAATCAAC 145827456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412833413738111