Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 seq10 102 7e-17 seq8 102 7e-17 seq1308 86.0 5e-12 >seq12 Length=229934170 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || ||||| || || || || |||||| | || ||| | Sbjct 186924572 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACGATTACCTTGGAGGTTGAGAGTTC 186924513 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| |||||| || ||||| || | ||| ||||| Sbjct 186924512 AGATACCATTGACAATGTCAAAGCAAAGATCCAAGACAAAGAGGGGATTCCCCCAGATCA 186924453 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | |||| ||| |||||||| || ||||| | || ||| | || ||||| || Sbjct 186924452 GCAGCGTTTGATTTTTGCTGGTAAACAACTTGAGGATGGCAGAACTCTTGCAGACTATAA 186924393 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786 ||| || |||||||| || | || |||||||| | ||| | ||||| ||| Sbjct 186924392 CATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTTTGAGGGGGGGGAAT 186924341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107544 AAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAA 107603 ||| ||| |||||||| || ||||| || || | || || || || |||||| | || Sbjct 3485609 AAGTGGTGAAAAATGCAGATCTTTGTGAAGACCCTGACGGGTAAGACTATTACCTTAGAG 3485550 Query 107604 ACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTG 107663 ||| | ||| || ||| | | || || |||||| || || |||||| | Sbjct 3485549 GTAGAGTCATCCGACACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGCATC 3485490 Query 107664 CCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATG 107723 || ||| |||||||| | |||| || ||||| ||||| ||||| | | ||| | Sbjct 3485489 CCGCCGGACCAGCAGAGGTTGATTTTCGCAGGTAAGCAGCTCGAGGATGGCCGGACACTA 3485430 Query 107724 GCGGACTACAACATTCAAAAGGAGTCTAC 107752 || ||||||||||| || |||||||| || Sbjct 3485429 GCTGACTACAACATCCAGAAGGAGTCCAC 3485401 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | |||||||| ||||||||| | ||| || | Sbjct 186925027 ATGCAGATCTTTGTCAAAACACTTACAGGCAAGACCATTACCCTTGAAGTTGAAAGTTCA 186924968 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||| ||| ||||| ||||| | || || ||| Sbjct 186924967 GATACAATTGACAACGTGAAGGCAAAAATTCAGGATAAGGAAGGGATTCCTCCAGACCAG 186924908 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | || || || || || ||||| | | || |||| ||||||||| Sbjct 186924907 CAGCGACTGATCTTCGCTGGCAAGCAACTTGAGGATGGAAGGACCCTGGCAGACTACAAC 186924848 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || ||||| || |||| Sbjct 186924847 ATTCAGAAAGAGTCAACCCTGCA 186924825 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | ||||| || ||||| || || | || || || ||||| ||| | || ||| Sbjct 186925489 TTTCAGATGCAGATCTTTGTTAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTCGAG 186925430 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | || || | | | | || ||| ||| ||| ||||| || ||| | ||| Sbjct 186925429 AGTTCTGACACCATTGACAACGTTAAAGCAAAAATTCAAGATAAGGAGGGCATCCCCCCT 186925370 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| || |||||||| || || | ||| | || ||| Sbjct 186925369 GATCAGCAGAGGCTGATCTTTGCTGGAAAACAGCTTGAAGATGGACGAACTCTTGCTGAC 186925310 Query 107730 TACAACATTCAAAAGGAGTCTAC 107752 |||||||| |||||||||||||| Sbjct 186925309 TACAACATCCAAAAGGAGTCTAC 186925287 >seq10 Length=205736368 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || || || || || ||||| || | || |||| | Sbjct 338893 ATGCAAATTTTTGTGAAGACCTTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGTTCT 338834 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || || |||||| || || || ||| | ||| || ||| Sbjct 338833 GATACTATTGACAATGTGAAGACTAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 338774 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| || || | | || |||||||||||||| Sbjct 338773 CAGAGGCTGATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACTCTGGCGGACTACAAC 338714 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| |||||| Sbjct 338713 ATCCAAAAGGAGTCTACTTTGCAC 338690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || || ||||| || ||||| ||||||||| | || ||| ||| Sbjct 339121 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCT 339062 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || ||||| || | || ||| || Sbjct 339061 -GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCGGACCA 339003 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| ||||| ||| |||| || | | ||| |||| || ||||| Sbjct 339002 GCAAAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAA 338943 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||||||||| || || | || | |||||||| Sbjct 338942 TATTCAAAAGGAATCGACCCTTCATCTTGTGTTGAG 338907 >seq8 Length=153299543 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || || || ||||| || | || |||| | Sbjct 133641879 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGTTCT 133641820 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | | || || |||||| || || || ||| | ||| || ||| Sbjct 133641819 GATACTATCGACAATGTGAAGACTAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 133641760 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| || || | | || |||||||||||||| Sbjct 133641759 CAGAGGCTGATCTTTGCAGGGAAGCAGCTCGAAGATGGAAGGACTCTGGCGGACTACAAC 133641700 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| |||||| Sbjct 133641699 ATCCAAAAGGAGTCTACTTTGCAC 133641676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| ||| || || ||||| ||| ||||| ||| || Sbjct 145827652 ATGCAGATATTCGTGAAAACCCTAATAGAAAAGACCATCACCCTCGAAGTTGAGAGCAGC 145827593 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || || ||| |||||||||||| | | |||||| Sbjct 145827592 GATACCATCGACAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATAGCTTCTGATCAG 145827533 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| |||| ||| || |||||| |||| || | ||| || | ||||||||| Sbjct 145827532 CAGAGACTGATTTTTGCTGGAAAACAGTTGGAAGATGGTCGAACCCTGACTGACTACAAC 145827473 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||| || || || || | ||| | || |||| Sbjct 145827472 ATTCAGAAAGAATCAACTCTTCACCTTGTTCTGAG 145827438 >seq1308 Length=1742971 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || || || | |||||||| |||||||| | ||| |||| ||| Sbjct 184299 ATGCAAATTTTCGTTAAGACCCTCACAGGCAAGACCATTACTTTGGAAGTGGAGAGCT-C 184357 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| ||||| || || | ||| || || Sbjct 184358 CGACACCATCGACAATGTCAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCAGACCA 184417 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || ||| ||||||||| || | || || ||||| Sbjct 184418 GCAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGTCGTACTCTAGCTGATTACAA 184477 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||||||||| | ||| ||||| Sbjct 184478 CATCCAGAAGGAGTCTACTCTCCACTTGGTG 184508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398868890647003