Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 2e-14 seq12 91.5 2e-13 seq8 89.7 8e-13 >seq3 Length=261510930 Score = 95.1 bits (104), Expect = 2e-14 Identities = 155/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTG-ATGTAGAACATAACGATAC 146095 || ||| | |||||| |||| | ||||| || || ||| | || || || ||| | Sbjct 37117150 ATCTTCGTCAAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAAGTAGCGACAT 37117091 Query 146096 TATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAG 146155 || | ||||| || ||||| ||| |||||||| || || | |||||| || || Sbjct 37117090 GATCGACAATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGATCAGCAGAG 37117031 Query 146156 ACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACA 146215 ||| ||||||| || |||||||| || ||| | |||| || | ||||| ||||| || Sbjct 37117030 ACTAATTTTTGGTGGCAAACAATTGGAAGATGGTCGAACTCTAGCTGATTACAATATTCA 37116971 Query 146216 AAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||||||| | | || || || || | | |||||||| Sbjct 37116970 AAAAGAATCAATGCTTCACTTGGTTTTGAGGCTCAGAGGAGG 37116929 Score = 89.7 bits (98), Expect = 8e-13 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || |||| || || || ||||| |||| || ||| || || Sbjct 37145584 TGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGCG 37145525 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||||| || ||||| || || || | || || Sbjct 37145524 ACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTGACCAGT 37145465 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||||| || ||||| || || ||| |||| || | ||||| |||| Sbjct 37145464 AAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACAATA 37145405 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||||||||| || | || || || || | | |||||||| ||| | |||| Sbjct 37145404 TTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGG--AATTATTATT 37145349 >seq12 Length=229934170 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||||||| | ||||| | || ||||| || || ||| |||| || || | | | Sbjct 186925254 TGCAAATATTCGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA- 186925196 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| |||||| ||| || || |||||| |||| ||||| Sbjct 186925195 GACACCATTGATAATGTCAAAGCTAAAATTCAAGACAAGGAGGGCATTTCACCTGATCAG 186925136 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || ||||| || ||||| | || ||| |||||| | | || || || Sbjct 186925135 CAGAGGCTGATCTTTGCTGGAAAACAGCTTGAAGATGGTAGAACACTTGCTGACTACAAC 186925076 Query 146211 ATACAAAAAGAATCGAC 146227 || ||||| || || || Sbjct 186925075 ATCCAAAAGGAGTCAAC 186925059 >seq8 Length=153299543 Score = 89.7 bits (98), Expect = 8e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | ||||| ||| || ||| || || || | || || || | || Sbjct 145827651 TGCAGATATTCGTGAAAACCCTAATAGAAAAGACCATCACCCTCGAAGTTGAGAGCAGCG 145827592 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || ||||| || |||||||||||| | | ||||| | Sbjct 145827591 ATACCATCGACAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATAGCTTCTGATCAGC 145827532 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| |||||||| || ||||| || || ||| | |||| | || || || || | Sbjct 145827531 AGAGACTGATTTTTGCTGGAAAACAGTTGGAAGATGGTCGAACCCTGACTGACTACAACA 145827472 Query 146212 TACAAAAAGAATCGACT 146228 | || |||||||| ||| Sbjct 145827471 TTCAGAAAGAATCAACT 145827455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786150411340840