Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 4e-16 seq1627 93.3 2e-14 seq1626 93.3 2e-14 seq1443 93.3 2e-14 seq362 93.3 2e-14 seq193 93.3 2e-14 seq12 93.3 2e-14 seq7 93.3 2e-14 seq3 93.3 2e-14 seq1 93.3 2e-14 seq11 84.2 8e-12 seq162 80.6 1e-10 seq10 80.6 1e-10 >seq5 Length=217274494 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 10009394 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 10009335 Query 50170 CTGCTCTACTCCGC 50183 |||||||||||||| Sbjct 10009334 CTGCTCTACTCCGC 10009321 >seq1627 Length=511530 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 326080 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 326139 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 326140 CTGCTCTACCCCGC 326153 >seq1626 Length=156781 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38133 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38192 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 38193 CTGCTCTACCCCGC 38206 >seq1443 Length=21959 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 18965 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 18906 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 18905 CTGCTCTACCCCGC 18892 >seq362 Length=114031 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 59902 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 59843 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 59842 CTGCTCTACCCCGC 59829 >seq193 Length=6724 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 4282 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 4341 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 4342 CTGCTCTACCCCGC 4355 >seq12 Length=229934170 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 68595471 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 68595412 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 68595411 CTGCTCTACCCCGC 68595398 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 164548151 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 164548092 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 164548091 CTGCTCTACCCCGC 164548078 >seq7 Length=222112641 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 94665948 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 94666007 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 94666008 CTGCTCTACCCCGC 94666021 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| |||| ||| ||||||||| |||||||||| || Sbjct 38354966 GTTGCGGAGACAGGATTTGAACCCGTAACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38355025 Query 50170 CTGCTCTACTCCGC 50183 ||| ||||| |||| Sbjct 38355026 CTGGTCTACCCCGC 38355039 >seq3 Length=261510930 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 27926468 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 27926409 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 27926408 CTGCTCTACCCCGC 27926395 >seq1 Length=301019445 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 75940277 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 75940336 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 75940337 CTGCTCTACCCCGC 75940350 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 171248028 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 171247969 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 171247968 CTGCTCTACCCCGC 171247955 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 181010515 TTGCGGAGATAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAT 181010574 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 181010575 TGCTCTACCCCGC 181010587 >seq11 Length=220335243 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||| | | |||| ||| ||||||||| |||||||||| || Sbjct 188812512 GTTGCGGAGACAGGATTTGAACCTGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 188812453 Query 50170 CTGCTCTACTCCGC 50183 || |||||| |||| Sbjct 188812452 CTACTCTACCCCGC 188812439 >seq162 Length=343837 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | |||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 186345 GTTGCGGAGACAGGATTTGAACTTATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 186404 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 186405 CTGCTCTACCCCGC 186418 >seq10 Length=205736368 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| |||| | ||||||||||| | | |||| ||| ||||||||| |||||||||| || Sbjct 93559903 GTTGTGGAGACAGGATTTGAACCAGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 93559844 Query 50170 CTGCTCTACTCCGC 50183 || |||||| |||| Sbjct 93559843 CTACTCTACCCCGC 93559830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181599691312674