Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq12 105 7e-18 seq10 96.9 3e-15 seq7 84.2 2e-11 seq3 84.2 2e-11 >seq12 Length=229934170 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || ||||| |||||||| || | ||| || ||||| || ||| Sbjct 186925053 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCAAGTGTTCTACCATCTTCAAGCTGT 186925112 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || |||||| ||||||| | |||||||| || | ||||| || ||||| |||||| Sbjct 186925113 TTTCCAGCAAAGATCAGCCTCTGCTGATCAGGTGAAATGCCCTCCTTGTCTTGAATTTTA 186925172 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | ||||||| | || || |||| ||| | ||||| |||||| Sbjct 186925173 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 186925232 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| |||||||||||||| Sbjct 186925233 AGAGTTTTAACGAATATTTGCAT 186925255 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || |||||||| || ||||||||||| || || || || || ||||| || ||| Sbjct 186924603 GTTGATTCTTTCTGAATGTTGTAATCCGCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCA 186924662 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| | | ||||| || ||||| || ||||| ||||| || ||| ||| Sbjct 186924663 GCAAAGATTAATCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGCTTTA 186924722 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| || || || | ||| | ||||| ||||||||||| Sbjct 186924723 ACATTATCGATGGTATCTGAACTCTCAACCTCCAGAGTGATTGTCTTCCCGGTCAATGTC 186924782 Query 137395 TTTACGAATATTTGCAT 137411 || || ||||||||||| Sbjct 186924783 TTGACAAATATTTGCAT 186924799 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 137186 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTC 137244 |||| | |||||||| || | ||||| ||| || || | ||||||||||| || ||| Sbjct 117694476 CTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTCCTGTATGTTGTAGTCAGCTG 117694417 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| ||| ||||| ||||| || || ||| | |||| ||| | ||| ||||| || Sbjct 117694416 AGTGTCCTCCCATCTTCAAGTTGCTTGCCTGCAAATATCAAACGCTACTGGTCGGG-GGA 117694358 Query 137305 ATGCCTTCTTTGTC 137318 || ||||| ||||| Sbjct 117694357 ATACCTTCCTTGTC 117694344 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253 |||||||| || ||||| | || || || || || ||||| || || | || || Sbjct 186924354 AAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAGTTCTG 186924413 Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313 || || ||||||||||||||| | |||| ||| |||||||| || || || || ||| Sbjct 186924414 CCATCCTCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGGAATCCCCTCT 186924473 Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373 ||||| || ||| ||| | | || | || |||| || || || | || Sbjct 186924474 TTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCAAGGTA 186924533 Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||||| || ||||| || || || || |||||||| Sbjct 186924534 ATCGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCAT 186924571 >seq10 Length=205736368 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||||| | || ||||| | ||| || ||||| || ||||||||||| Sbjct 187644235 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 187644294 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || ||| || || || || || |||||| | |||| ||| ||||| || || || Sbjct 187644295 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGTGGA 187644354 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || ||| ||| | | || | ||||||| || || Sbjct 187644355 ATCCCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCGATGGTGTCTGAACTCTCAACC 187644414 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| || |||||||| || ||||| || |||||| Sbjct 187644415 TCCAAGGTGATGGTCTTTCCAGTCAATGTCTTAACGAAAATCTGCATA 187644462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/119 (77%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCT 137259 ||| | ||||| || |||||||| || ||||||||||| || || |||| ||| Sbjct 3762238 AACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAAGGT--TCGACCATCT 3762181 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 || |||||||| |||||| | ||||| | |||||||| || |||||||||||||| || Sbjct 3762180 TCCAGTTGTTTCCCAGCAAATATCAGTCTCTGCTGATCAGGCGGTATGCCTTCTTTATC 3762122 >seq7 Length=222112641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | | |||||| || |||| ||| |||||||| || || |||||||| | Sbjct 220953979 CCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 220954038 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || |||| ||||| | ||||| |||||| | || || | ||||| || |||| Sbjct 220954039 AGAGT--TCGACCATCTTCCAACTGTTTGCCAGCAAAAATTAGCCTCTGCTGGTCAGGAG 220954096 Query 137303 GTATGCCTTCTTTGTC--GGTAA 137323 |||| ||||||||||| ||||| Sbjct 220954097 GTATCCCTTCTTTGTCCTGGTAA 220954119 >seq3 Length=261510930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 ||||||| | | |||||| || |||| | ||||||||||| || |||||||| ||| Sbjct 37116929 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCATTGATTCTTTTTGAATATTGTAATCAGCT 37116988 Query 137244 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | | |||| ||||| | |||||| ||| || | || || | ||||||||| || Sbjct 37116989 A---GAGTTCGACCATCTTCCAATTGTTTGCCACCAAAAATTAGTCTCTGCTGATCGAGA 37117045 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTT 137327 ||||| ||||||||||| |||||| Sbjct 37117046 GGTATCCCTTCTTTGTCTTGAATTTT 37117071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488534064236400