Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 100 7e-16 >seq2 Length=163962470 Score = 100 bits (110), Expect = 7e-16 Identities = 275/418 (66%), Gaps = 10/418 (2%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || |||||||||||||||||||| || ||||| || || ||||||| | || |||||| Sbjct 163233137 GTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGTTCGATATTTTGG 163233196 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 | || ||| | || || ||||||||| | | || || ||| | || || ||||| || Sbjct 163233197 TTGAAAAAGAGAGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTGATTTCGAGGGAC 163233256 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGA----TAAACT 132039 |||| ||||| ||| |||||| || | || || |||||||| || || Sbjct 163233257 GAAGGTTTGCACTGTGATTTTGCTTGCTTGCTTTACAG----TTTGCTGAGGACGAAGCT 163233312 Query 132040 TGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTAT 132099 | | | | | || | || || || ||||| || | ||||||| | Sbjct 163233313 CTCCGTGGAGCGAGTGAGGGGAATTGTTGCTGACGCCGTGGATATAGAAAGGGAGTTTGT 163233372 Query 132100 TACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACAT 132159 || || |||||||| |||| | || ||||||| || | |||| | ||||| Sbjct 163233373 GTGTGATGCCTTGCCTTGTGCTTTGGTGGGAATGAATGGAGATTTGATGAGTAAATACAT 163233432 Query 132160 TGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCA 132219 |||||| || |||||| | || | || | || ||| ||||| ||||| | || Sbjct 163233433 TGAATTTGTGGCTGATAGATTGTTAGACGCTTTGGGTTATGAGAAGATGTATAATGCACA 163233492 Query 132220 AAACCCCTATACATGGATGGAGTCAATTTCGCTT-GAAGGTAAAACGAACTTCTTCGA 132276 || || | | ||||||||| | || |||| |||| || ||||| ||||| || Sbjct 163233493 GAATCCATTTGATTGGATGGAG-CTGATTAGCTTACAAGGGAAGACGAATTTCTTTGA 163233549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186788059774547