Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 9e-16 seq777 89.7 5e-13 seq12 82.4 7e-11 >seq8 Length=153299543 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| |||||||||||||| ||| ||| || |||||| | |||||| || | Sbjct 145827457 TTGATTCTTTCTGAATGTTGTAGTCAGTCAGGGTTCGACCATCTTCCAACTGTTTTCCAG 145827516 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | || || | ||| ||||| | || ||||||||||||||| |||||| || | Sbjct 145827517 CAAAAATCAGTCTCTGCTGATCAGAAGCTATGCCTTCTTTATCCTGAATTTTGGCCTTGA 145827576 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | |||||| | ||| ||||||| || | || || | | || |||| Sbjct 145827577 CATTGTCGATGGTATCGCTGCTCTCAACTTCGAGGGTGATGGTCTTTTCTATTAGGGTTT 145827636 Query 132108 TTATGAAAATCTGCATGACTTATT 132131 | | ||| |||||||||| | ||| Sbjct 145827637 TCACGAATATCTGCATGATTGATT 145827660 >seq777 Length=10791 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | ||||||| || || |||||||||||| | ||||| ||||||| Sbjct 1738 ACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCATCTTCG 1679 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || |||| | |||||||| ||||| ||||| || || ||||| || || Sbjct 1678 AGTTGCTTTCCGGCGAAAATTAGACGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 1619 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || |||| | || ||||||| || | ||||| Sbjct 1618 ATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGATTCAACTTCGAGGGTGATTGTTTTC 1559 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||| |||||||| Sbjct 1558 CCGGTTAGGGTTTTCACGAAGATCTGCAT 1530 >seq12 Length=229934170 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||||||||| |||||||||||||| || ||| | ||| || Sbjct 186924818 AACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCTGCCAGGGTCCTTCCATCCTC 186924877 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || || | |||| || ||||| || |||||||| || ||||| ||||| Sbjct 186924878 AAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCTGGAGGAATCCCTTCCTTATCCTG 186924937 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| |||| | || | ||||| | || ||||| | || | || || Sbjct 186924938 AATTTTTGCCTTCACGTTGTCAATTGTATCTGAACTTTCAACTTCAAGGGTAATGGTCTT 186924997 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | || |||||||| Sbjct 186924998 GCCTGTAAGTGTTTTGACAAAGATCTGCAT 186925027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601506919720