Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq8 87.8 2e-12 seq10 86.0 6e-12 seq7 84.2 2e-11 >seq3 Length=261510930 Score = 123 bits (136), Expect = 2e-23 Identities = 163/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCG-AAGTCGAAGCCAACGATACTAT 25242 || || |||||| ||||| | ||| | ||||| | | ||||| || | ||| | || Sbjct 37117147 TTCGTCAAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAAGTAGCGACATGAT 37117088 Query 25243 CGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACT 25302 ||| | || || |||||| || ||||| || ||||| | ||||||||| ||||| Sbjct 37117087 CGACAATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGATCAGCAGAGACT 37117028 Query 25303 CATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAATATTCAAA 25361 |||| || ||||||||| | ||||||| | ||| | | ||| |||||||||||||||| Sbjct 37117027 AATTTTTGGTGGCAAACAATTGGAAGATGGTCGAACTCT-AGCTGATTACAATATTCAAA 37116969 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||| | |||| || || || || | |||||||||| Sbjct 37116968 AAGAATCAATGCTTCACTTGGTTTTGAGGCTCAGAGGAGGAA 37116927 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || ||||||| || | || || | ||||||||| | Sbjct 37145586 CATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAG 37145527 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || ||||| | || || |||||| || ||||| || ||||||| || || Sbjct 37145526 CGACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTGACCA 37145467 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 | ||||||| |||| || |||||||| | ||||||| ||| | | ||| ||||||| Sbjct 37145466 GTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCT-AGCTGATTACA 37145408 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||||||| || |||| || || || || | |||||||||| Sbjct 37145407 ATATTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGGAA 37145357 >seq8 Length=153299543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||||| || || ||||| || || || || | || || | || || ||| | | Sbjct 133642107 ATGCAAGTCTTCGTGAAAACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCC 133642048 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| || |||||||| || || || |||||| Sbjct 133642047 GACACAATCGACAACGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAG 133641988 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAA-TGTCAGCGATTACA 25352 ||||| | |||| | || || || | ||||||| | || | || | |||||||| Sbjct 133641987 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGACGGACACTGGC--CGATTACA 133641930 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || ||||| ||| ||||| | ||||| || | || ||||| Sbjct 133641929 ATATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTAAGGGGAGG 133641881 >seq10 Length=205736368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || || | || || | || || ||| | Sbjct 339121 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCT 339062 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| || ||||||||||| || || || ||| Sbjct 339061 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCGGACCAG 339002 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | ||| || || | ||||||| || | | |||||||||| Sbjct 339001 CAAAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 338942 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| ||| ||||| | ||||| || | || ||||| Sbjct 338941 ATTCAAAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 338895 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 |||||| | ||||| ||||| || || ||||| | || || | || || || ||| Sbjct 187644918 CATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACTATTACCCTTGAGGTTGAGAGCTC 187644859 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || ||||| || | || || ||||||| || || ||||| || || || |||| Sbjct 187644858 A-GACACTATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGCATTCCTCCAGATC 187644800 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 ||||||| | |||| | || || |||||||| |||| | | | | || |||| Sbjct 187644799 AGCAAAGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGTCGTACCCTTGCTGACTACA 187644740 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || ||||| ||| | ||| | ||| | | ||||||| || Sbjct 187644739 ATATTCAGAAGGAATCAACCCTCCATCTGGTGCTGCGGCTGAGAGGTGG 187644691 >seq7 Length=222112641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 25263 TTACC--GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 ||||| || ||||| || ||||| || || ||||| || || |||| | |||||||| Sbjct 220954119 TTACCAGGACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTAATTTTTGCTGGCAAACA 220954060 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | ||||||| | ||| | | ||||||||||| || |||||||| || |||| || Sbjct 220954059 GTTGGAAGATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACTT 220954000 Query 25381 AGTGTTAAGATTGAGAGGAGGAA 25403 || || || | |||||||||| Sbjct 220953999 GGTTTTGAGGCTCAGAGGAGGAA 220953977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445085347892640