Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 seq8 95.1 1e-14 seq3 95.1 1e-14 seq10 89.7 4e-13 >seq7 Length=222112641 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || ||| || || ||||| |||| ||| |||||||| || ||| Sbjct 220954112 GACAAAGAAGGGATACCTCCTGACCAGCAGAGGCTAATTTTTGCTGGCAAACAGTTGGAA 220954053 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| ||| |||||||| || || |||||||| ||||| || || || ||| Sbjct 220954052 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 220953993 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||||||| Sbjct 220953992 AGGCTCAGAGGAGGA 220953978 >seq8 Length=153299543 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||| | || || ||||| ||||||||||||||||||||| | || ||| | | Sbjct 133642107 ATGCAAGTCTTCGTGAAAACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCC 133642048 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | | || || || ||| |||||||| ||| | || ||||| Sbjct 133642047 GACACAATCGACAACGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAG 133641988 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||| | |||| ||| || || || || |||||| || ||| ||||||||| Sbjct 133641987 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGACGGACACTGGCCGATTACAAT 133641928 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || ||||| || || ||| | || |||||| || | ||||| Sbjct 133641927 ATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTAAGGGGAGG 133641881 >seq3 Length=261510930 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 106344 AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAA 106403 |||||| ||||||||||| | || | ||||| || || || |||| || |||||| Sbjct 37117071 AAAATTCAAGACAAAGAAGGGATACCTCTCGATCAGCAGAGACTAATTTTTGGTGGCAAA 37117012 Query 106404 CAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 ||||| |||||| | |||| | | |||||||| || ||||||||||| | || || Sbjct 37117011 CAATTGGAAGATGGTCGAACTCTAGCTGATTACAATATTCAAAAAGAATCAATGCTTCAC 37116952 Query 106464 TTAGTATTGAGGTTACGAGGAGG-ATAATGAT 106494 || || |||||| | ||||||| || ||||| Sbjct 37116951 TTGGTTTTGAGGCTCAGAGGAGGAATTATGAT 37116920 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || || | || || |||||||||||| | ||| ||| || Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | | || || |||||| |||||||| || | || ||| || Sbjct 37145525 GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTGACCAG 37145466 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||| || |||| || |||||||| || |||||| |||| | | |||||||| Sbjct 37145465 TAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACAAT 37145406 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||||||||| ||||| || || || |||||| | |||||||| Sbjct 37145405 ATTCAAAAAGAATCAACACTTCACTTGGTTTTGAGGCTCAGAGGAGGA 37145358 >seq10 Length=205736368 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || || || ||||||||||||||||||||| | || ||| | Sbjct 339121 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCT 339062 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | | ||||| || ||| |||||||| || | || || || Sbjct 339061 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCGGACCAG 339002 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||| | |||| ||| || || || || |||||| | || ||| ||||||||| Sbjct 339001 CAAAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 338942 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || || ||| | || |||||| | | ||||| Sbjct 338941 ATTCAAAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 338895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402321622181216