Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 6e-13 >seq2 Length=163962470 Score = 93.3 bits (102), Expect = 6e-13 Identities = 339/523 (65%), Gaps = 12/523 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | || | | ||| ||||||||||| || || ||| ||| || ||| Sbjct 163232709 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTA-TAAGAAAGCCATGGCATCTTTT 163232767 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || || || ||||| | ||||| || ||||||| |||| | Sbjct 163232768 TGGACTGCTGAAGAAGTCGATTTATCGGCCGATACCCGTCACTGGGAAAATCTGACGTCC 163232827 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | || | || || |||| ||||| || || || ||| || || ||||| ||||| Sbjct 163232828 GGTGAAAGGCACTTTATCACTCACGTGCTTGCGTTCTTT-GCAGCATCGGATGGTATCGT 163232886 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 ||||| || || || | || |||||||| || ||| | | ||||| ||| || Sbjct 163232887 TTTGGAGAATCTCGCTGGGAGGTTCATGAAAGATGTGCAAGTTGCTGAGGCGCGTGCTTT 163232946 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 || || || || || || || || || ||||| ||||| | ||| | ||| | || Sbjct 163232947 CTATGGATTTCAAATTGCTATTGAGAATATCCATTCTGAGATGTACAGTTTGCTGTTGGA 163233006 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 | ||| ||||||| | | || ||| || | || ||||| || || || | || Sbjct 163233007 GTCGTACATCAAGGATTCTGATGAAAAGAACAGGTTGTTCCGCGCAATTGAGACTATCCC 163233066 Query 1456113 GT-CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | || ||| ||| ||||| | ||||| | ||||| || || || | Sbjct 163233067 TTGCGTTGA-GAAGAAGGCGAAATGGGCTCTCCGTTGGAT------TGAAGGTTCGGAGA 163233119 Query 1456172 C-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 | ||||| ||||| | || | ||||| | || || || || || ||||| || |||| Sbjct 163233120 CTTTTGCTGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTT 163233179 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||| | || |||||| | || ||| | || | ||||| || Sbjct 163233180 TCTGTTCGATATTTTGGTTGAAAAAGAGAGGGTTAATGCCTGG 163233222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177654272859574