Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq12 104 3e-17 seq668 100 4e-16 >seq2 Length=163962470 Score = 150 bits (166), Expect = 2e-31 Identities = 579/906 (64%), Gaps = 14/906 (2%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||||||| ||| || || || ||||| | ||||| || ||||| || || ||| Sbjct 163233588 GACATAACTGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTCGTCTTCCCT 163233529 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 | || || ||||| ||||||| ||||| ||||||||| | || | | | Sbjct 163233528 TGTAAGCTAATCAGCTCCATCCAATCAAATGGATTCTGTGCATTATACATCTTCTCATAA 163233469 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || || | | ||||||||| || |||||||| |||||| | |||||| || | | Sbjct 163233468 CCCAAAGCGTCTAACAATCTATCAGCCACAAATTCAATGTATTTACTCATCAAATCTCCA 163233409 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 |||||||| | | | || | || || | |||||| |||| || || ||| Sbjct 163233408 TTCATTCCCACCAAAGCACAAGGCAAGGCATCACACACAAACTCCCTTTCTATATCCACG 163233349 Query 39551 GCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATG-----CAATAAATGTT 39605 || || | | || | ||| ||| ||| | | | || ||| | Sbjct 163233348 GCGTCAGCAACAATTCCCCTCACTCGCTC--CACGGAGAGCTTCGTCCTCAGCAAACTGT 163233291 Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 || || |||| || || ||||| || | || || || || ||| || || || | Sbjct 163233290 AAAGCA---AGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTG 163233234 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 | || || | ||||||||||| || | |||||| | ||||||||| | | ||| || Sbjct 163233233 AGAAGGTTAATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTC 163233174 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGT 39783 |||| ||||| || ||||| || ||||| || || | | ||| | || || Sbjct 163233173 CAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCG 163233114 Query 39784 ATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 | | || ||||| | ||||| | || ||||||| || ||||| || || || Sbjct 163233113 AACCTTCA--ATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTC 163233056 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 || || || | | ||||||||| ||| || | || | || | | || Sbjct 163233055 AATTGCGCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAA 163232996 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 ||| ||||| || |||||||| || ||||| || || |||||||| || ||| | || Sbjct 163232995 ACTGTACATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGC 163232936 Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023 |||| || ||| || ||| || || | || | ||| || || || ||||| Sbjct 163232935 CTCAGCAACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATC 163232876 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTT 40083 || ||||| || || | || || | ||||| | ||||| ||| |||| || Sbjct 163232875 CGATGCTGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATT 163232816 Query 40084 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTC 40143 | ||||| | | |||| |||| ||| ||||||||||| |||||||| || ||| Sbjct 163232815 TTCCCAGTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCAT 163232756 Query 40144 TGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATT 40203 || || || ||||| | ||| || | |||| || ||||| || ||| |||| || Sbjct 163232755 GGCTTTCTTATACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 163232696 Query 40204 TGGATT 40209 ||| || Sbjct 163232695 TGGGTT 163232690 >seq12 Length=229934170 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | ||||||||||| | |||| | || | |||||| |||| || ||| Sbjct 176960352 CCTCCTTGGTCAAAATATCTGGCAGTATCATTAAATACACGCAGCATAGGAACGATTCCA 176960293 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| ||| ||||| || | || || ||||| | |||| Sbjct 176960292 TTTGATGTCCCGTTTGTTCCACGAATGTAACTCCCAGTAGCACGTATATTGTGCACAGAT 176960233 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| || || ||| || |||||| ||| | || |||||||| Sbjct 176960232 ACACCAATTCCCCCAGCTGATTTGCTTATAGCAGCACATTCTTTAAGAGTATCATATATG 176960173 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | || || |||||| Sbjct 176960172 CCCTCAATACTATCCTCTTTCATGCATATCAGGAAGCAGCTA 176960131 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||||| ||| |||||||| ||||||||||| || ||| | || || Sbjct 176959954 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCATTGAGACATCAAATG 176959895 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| | || | ||||| ||||| || || ||||| | | || | ||||| Sbjct 176959894 ATATGTCTTGATGACAGATTCAATATCTTCCTTGTGGATTCCAACAGATACTCTCATCAG 176959835 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| |||| | || ||||| ||||| || | || || Sbjct 176959834 CATGTGTTGTGGCCTTTCTACAATTTTTCCCTGAATCTTCAAAAGGTAAGACCTCTCAAG 176959775 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 176959774 GGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCTATCATATATGAT 176959727 >seq668 Length=133065 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| ||| ||| | || || Sbjct 40209 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 40268 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| || || || || | | ||| | ||||| Sbjct 40269 ATACGTCTTGATGGCAGATTCAATATCATCCTTGTGGATCCCAACAGAGACTCTCATCAG 40328 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | |||||| ||| || || || || ||||| || | || || Sbjct 40329 CATATGTTGTGGCCTTTCTACAACTTTTCCATCAATCTTTAAGAGGTAAGACCTCTCTAG 40388 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || ||||| Sbjct 40389 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATATATAAT 40436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686894829992280