Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 152 4e-32 >seq2 Length=163962470 Score = 152 bits (168), Expect = 4e-32 Identities = 572/878 (65%), Gaps = 27/878 (3%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| |||| | || ||| ||||||| || ||||| ||| || |||| Sbjct 163232709 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTATAAGAAAGCCATGGCATCTTTTT 163232768 Query 43767 GGACAGCAGAAGAAGTTGATTT----GACTAAAGACTTAGCACATTGGATTGCATTAAAA 43822 |||| || |||||||| ||||| | | | | | | ||| | ||| | | Sbjct 163232769 GGACTGCTGAAGAAGTCGATTTATCGGCCGATACCCGT--CAC-TGGGAAAATCTGACGT 163232825 Query 43823 CCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 || |||| || ||||| || || | ||||| ||||| || || || || Sbjct 163232826 CCGGT-GAAAGGCACTTTATCACTCACGTGCTTGCGTTCTTTGCAGCATCGGATGGTATC 163232884 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 || || ||| | | | | |||| | |||| || ||| | | || || || | Sbjct 163232885 GTTTTGGAGAATCTCGCTGGGAGGTTCATGAAAGATGTGCAAGTTGCTGAGGCGCGTGCT 163232944 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||| ||||||||||| || || ||||| ||||| || ||||||||| | ||| | Sbjct 163232945 TTCTATGGATTTCAAATTGCTATTGAGAATATCCATTCTGAGATGTACAGTTTGCTGTTG 163233004 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || |||||||||| ||| | || ||| | | ||||| || || || || | Sbjct 163233005 GAGTCGTACATCAAGGATTCTGATGAAAAGAACAGGTTGTTCCGCGCAATTGAGACTATC 163233064 Query 44063 CCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTC 44118 ||| ||| | | | | || || | ||||| || ||||| | ||| | || | Sbjct 163233065 CCTTGCGTTGAGA-AGAAGGCGAAATGGGCTCTCCGTTGGATTGAAGGTTCGGA-GA--C 163233120 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 ||||| || || | || || ||||| ||| ||||| |||||||| || ||| ||| Sbjct 163233121 TTTTGCTGAGCGTTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAA-GTT 163233179 Query 44179 TGCGGCC-ATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 | | | ||||||||||| || || |||| || |||||||| || || || ||||||| Sbjct 163233180 TCTGTTCGATATTTTGGTTGAAAAAGAGAGGGTTAATGCCTGGATTAACCTTCTCAAATG 163233239 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG--TTACTTGGATA 44295 |||| || | || ||||| || || || ||||||||||||||| |||| | | Sbjct 163233240 AGTTGATTTCGAGGGACGAAGGTTTGCACTGTGATTTTGCTTGCTTGCTTTAC--AGTTT 163233297 Query 44296 TCTAGGAGACGATAAGC-CTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAA 44354 || | |||| |||| || | || || | | | | ||||||| || || || Sbjct 163233298 GCT-GAGGACG--AAGCTCTCCGTG-GAGCGAGTGAGGGGAATTGTTGCTGACGCCGTGG 163233353 Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAAC 44414 | |||||| || ||| || || || ||| ||| | |||||||||| | Sbjct 163233354 ATATAGAAAGGGAGTTTGTGTGTGATGCCTTGCCTTGTGCTTTGGTGGGAATGAATGGAG 163233413 Query 44415 TTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCG 44474 |||||||| |||| ||||||| | || ||| | || | | |||||| | Sbjct 163233414 ATTTGATGAGTAAATACATTGAATTTGTGGCTGATAGATTGTTAGACGCTTTGGGTTATG 163233473 Query 44475 ATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCA 44534 | || |||| || ||| || || ||||||| ||||| ||| || |||| | Sbjct 163233474 AGAAGATGTATAATGCACAGAATCCATTTGATTGGATGGAGCTGATTAGCTTACAAGGGA 163233533 Query 44535 AAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | || || || ||||| || | ||||| || |||||| Sbjct 163233534 AGACGAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAG 163233571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448118820135