Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 1e-14 seq1308 86.0 5e-12 seq12 84.2 2e-11 >seq10 Length=205736368 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | | || ||| || | ||| | || || || |||||||||||||| ||| | Sbjct 338895 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTTTGAATATTGTAATCGGCC 338954 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | ||| |||||||| |||| | | || || ||||| || Sbjct 338955 AGTGTCCTTCCATCTTCCAACTGCTTACCGGCAAAAATCAACCTTTGCTGGTCCGGTGGG 339014 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||| || |||||| |||| | | || | ||||| | | ||| || Sbjct 339015 ATACCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTTTCCACC 339074 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| |||| ||| ||||| ||||||||||| Sbjct 339075 TCAAGGGTAATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 339121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || |||| || | ||| | || | || || || ||||| ||||||||||| | Sbjct 187645145 TGCCACCACGCAGACGAAGTACAAGGTGAAGGGTGGACTCCTTTTGGATATTGTAGTCAG 187645204 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| | | || || | |||||| |||||| | || | | ||||||||| || Sbjct 187645205 CAAGAGTTCTAC-CATCCTCCAACTGTTTCCCGGCGAAGATCAATCTCTGTTGATCTGGA 187645263 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || ||||| ||| || ||| | | | || | |||||| | | ||| Sbjct 187645264 GGAATTCCTTCCTTATCTTGGATTTTAGCTTTGACGTTATCAATAGTGTCAGAGCTCTCA 187645323 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || | || ||||||| |||||||||||||| ||||| Sbjct 187645324 ACCTCAAGAGTAATTGTCTTCCCCGTCAATGTTTTCACAAAGATCTGCAT 187645373 >seq1308 Length=1742971 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || || |||||||| | |||||| || || || || |||||||| Sbjct 184297 CCACCACGTAGCCTCAGCACCAAATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCG 184238 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||||||||| || || |||||| | || | | ||| || || || || Sbjct 184237 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 184178 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| || | | || | ||||| | | ||| || Sbjct 184177 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCCACC 184118 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 || | || || | || || || ||||||||||||||||| ||||| |||| || || Sbjct 184117 TCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT--CTGCAAACAA 184061 >seq12 Length=229934170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| ||| ||| || | || |||||||| ||||| Sbjct 3485401 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTCCGGC-CATCCTCGAGCTGCTTACC 3485459 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| |||| | | ||| || |||||||| | || || || || |||||| | || Sbjct 3485460 TGCGAAAATCAACCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTGGTCTT 3485519 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | || || |||| || |||| || |||||||| || Sbjct 3485520 GACGTTGTCGATGGTGTCGGATGACTCTACCTCTAAGGTAATAGTCTTACCCGTCAGGGT 3485579 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 3485580 CTTCACAAAGATCTGCAT 3485597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925973949224