Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 113 6e-20 seq4 93.3 5e-14 >seq7 Length=222112641 Score = 113 bits (124), Expect = 6e-20 Identities = 284/422 (67%), Gaps = 10/422 (2%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| || ||||| | ||||| || || |||| ||| | || ||||| | ||||| Sbjct 203995033 ATCGAGAATATCTGCACGATTGGTTGCTGCAACAACTATTATACCAGTATTTCCTTCAAA 203994974 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | || ||| || | || |||||||| |||||||| || | | Sbjct 203994973 ACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCTCTTTCATCATTCCCT--CCT 203994916 Query 11602 ACCA--CCAGCACTGCGTTGCTTGCCCACC-GCATCAATCTCATCAATGAAGACAATACA 11658 | | |||| | | ||| | ||||| | |||||||| ||||||| || ||||| || Sbjct 203994915 CCGATTCCAGTCCCTCTTTG-TCGCCCAACAGCATCAATTTCATCAACAAATACAATGCA 203994857 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || |||||| ||| | | || ||||| || || | ||| || |||||||| Sbjct 203994856 GGGAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCAACACCAAC 203994797 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCG 11777 ||||||||| || || | || | || | || || ||||| ||| | |||||| | Sbjct 203994796 AAACATCTCGACGAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAG 203994738 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | || || || || |||||||| |||||||| || ||| | ||||| | ||| Sbjct 203994737 CAATTGCCTTTGCTAGCAGGGTCTTCCCCGTACCAGGAGGACCAACAAGAAGAACACCTT 203994678 Query 11838 GGGGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 || || | | | |||| | || | ||||| |||| ||| | ||| || |||| | Sbjct 203994677 TTGGAATACGAGCCCCCAC-TGCAGTGAACCTCTCAGGTTTCTTCAAAAATTCTACAACC 203994619 Query 11897 TC 11898 || Sbjct 203994618 TC 203994617 >seq4 Length=215701946 Score = 93.3 bits (102), Expect = 5e-14 Identities = 265/403 (66%), Gaps = 6/403 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | |||||||| || || || |||||||||||| | Sbjct 1232184 AAACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCC--A 1232127 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || |||| | ||| | || || |||||||||||||| || || ||||| Sbjct 1232126 CCTCCAAGTCCTGCACCTCTCTGCCTTCCTACAGCATCAATCTCATCGATAAACACAATG 1232067 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | || | ||||| | ||| | ||| || || |||||||| Sbjct 1232066 CAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACC 1232008 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| ||| ||||| | || || | || || ||||| ||| | |||||| Sbjct 1232007 CACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGCTTCACC 1231948 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 || | |||| || | || ||||| || |||||||| ||| | | ||| || Sbjct 1231947 AGCTACAGCTCTAGCTAAAAGTGTCTTCCCAGTACCTGGTGGACCGACCAAAAGACACCC 1231888 Query 11836 TCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAAT 11895 | || ||||| ||||| || ||| | || || | ||| | ||||||||| | Sbjct 1231887 TTTTGGTATCTTAGCACCTAAAGCAGTATACTTATCAGGATTCTTTAAAAAATCCACCAC 1231828 Query 11896 CTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 |||| || || ||| ||| ||| || |||||||| Sbjct 1231827 TTCTTGCAGCTCCAATTTAGCCTGATCAGCACCAGCAACATCA 1231785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019227399200